Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  253 bits (647), Expect = 7e-72
 Identities = 157/431 (36%), Positives = 239/431 (55%), Gaps = 16/431 (3%)

Query: 18  GGTYEPWLAVLEKVGWRCTQVADLRKADALFVETGPCIGIVDLSHDEFSLNGIANLVSSH 77
           G    P +AVL   GW    V +     A+  +    +G++ L+ D F        +  +
Sbjct: 16  GDDCHPLIAVLIAAGWT---VQESPSGSAIISDCD--VGLIHLTSDHFEHVSRLEALFVN 70

Query: 78  KQVRWLAFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPH 137
             VRW+A +  + L  + I  F+  +  DF T P    +L +++   L       +  P 
Sbjct: 71  SPVRWIAVLSASDLRREKIGDFVCRWFFDFHTLPFDAGRLHASLDRALTAGHPNVQGAPS 130

Query: 138 FGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKP 197
             SA    L+G+S P++ LR  + ++ PTD  +LI GE GTGKE +A+++H  S R  KP
Sbjct: 131 QFSA-EPELLGDSRPVRELRRLLSKLAPTDSPVLIRGERGTGKELIARSLHTQSLRRDKP 189

Query: 198 FISVNCRAMSEKRLESELFGL--GETEEGQQP---FLLQADGGTLLLNDILTLPKSQQLN 252
           FI V+C     + + + LFG   GE ++ Q+     L  ADGGTLLL+++  LP   Q +
Sbjct: 190 FIVVDCATPDGQSIHAVLFGHEDGEFDDAQERRVGLLEAADGGTLLLDEVGELPLDTQAS 249

Query: 253 LLRFLQEGTVETRQGVR--AVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSL 310
           LLRFL++  +E   G    AVDVR+LAA   D+E A+    F ++LY+ +NVL++ V  L
Sbjct: 250 LLRFLEDRQIERADGGEPIAVDVRVLAATREDLETAVRKKRFRDDLYYQLNVLQVGVAPL 309

Query: 311 KERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMS 370
           +ER  D+ LLA HF   YS+E   +ARSFS DA+  L ++ WPGNVREL  +++R ++++
Sbjct: 310 RERHGDLALLANHFAHLYSQETGRRARSFSQDALVALGKHDWPGNVRELAGRVRRGLVLA 369

Query: 371 DTVVLDESQLDLPKRSDGRRS---LKSIRERSERDALLLVLESHSGQVSTAAKELGVSRA 427
           +   ++ + L L    D   S   L+  + R+ER AL  VL  HS  +S AA+ LG+SR 
Sbjct: 370 EGRQIEAANLGLLGEEDSIGSMGTLEDYKSRAERQALCDVLTRHSDNLSVAARVLGISRP 429

Query: 428 TMYRLLNKHNL 438
           T YRLL+KH +
Sbjct: 430 TFYRLLHKHQI 440