Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., sigma-54-dependent transcription regulator protein from Sinorhizobium meliloti 1021

 Score =  183 bits (465), Expect = 1e-50
 Identities = 139/488 (28%), Positives = 232/488 (47%), Gaps = 75/488 (15%)

Query: 27  VLEKVGWRCTQVADLRKADALFVETGPCIGIV--DLSHDEFSLNGIANLVSSHKQVRWLA 84
           ++E++G       + R    L    G  I ++  DL   E + +G+   ++  + +    
Sbjct: 21  MIERLGHVAHLADNGRSGLELLQRKGGIINVILLDLLMPEMNGHGLLEALAE-RGIDIPV 79

Query: 85  FIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVW----PHFGS 140
            ++  Q   +T+ Q +     DF   P+   +L   +G+ L M   + KV     P  G+
Sbjct: 80  IVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKMASRDGKVKTARRPRGGA 139

Query: 141 AGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFIS 200
            G   ++  S  M R+ D  +R   +++ I++ GESG GKE VA+AI   S RA KPF++
Sbjct: 140 VGFDDIVSASPAMIRVIDLARRAAQSNIPIVLEGESGVGKEMVARAIQAASDRAAKPFVT 199

Query: 201 VNCRAMSEKRLESELFG------LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLL 254
           VNC A+    +ES LFG       G +E+    F + ADGGTL L++I  LP   Q+ LL
Sbjct: 200 VNCGAIPHNLVESILFGHEKGAFTGASEKHSGKF-VDADGGTLFLDEIGDLPLDVQVKLL 258

Query: 255 RFLQEGTVET--RQGVRAVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKE 312
           R +Q+G +ET   +  + V+VR+++A + D+   + +G F E+LY+ +NV  I +P+L+ 
Sbjct: 259 RAVQQGEIETIGARQPQKVNVRLISATNKDLITEVREGRFREDLYYRLNVFPITIPALRR 318

Query: 313 RASDIVLLAKHFLQEYSKEYNAQAR-SFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSD 371
           R  DI +L + F++ +S E     R + S  A+  LT Y WPGN+R+L N I R V+++D
Sbjct: 319 RKEDIPVLVRAFVERFSAEQRLDQRLTVSSGAMALLTSYDWPGNIRQLENAIFRAVVLAD 378

Query: 372 ------------------TVVLDESQLDLPKRSDGRR----------------------- 390
                              +V D S L   +    RR                       
Sbjct: 379 GHELTVRDFPQVATQIPGYIVADRSGLSWGEAGPERRPASGQLAAAQADAGAREQPAHSE 438

Query: 391 ---------SLKSIRE--------RSERDALLLVLESHSGQVSTAAKELGVSRATMYRLL 433
                    ++ S+ E          E + +   L+ + GQ+S  A++LG+ R+T+YR L
Sbjct: 439 QTPEGRLENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQVARKLGIGRSTLYRKL 498

Query: 434 NKHNLITD 441
             + +  D
Sbjct: 499 KDYGIDPD 506