Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  192 bits (487), Expect = 2e-53
 Identities = 124/309 (40%), Positives = 179/309 (57%), Gaps = 18/309 (5%)

Query: 144 MGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNC 203
           +GL+G++  M+ + D+I RI  TD ++LI GESGTGKE  A+A+H+ S RA  PFI++NC
Sbjct: 141 VGLVGKAPCMQGVFDRISRISGTDATVLIGGESGTGKELAARALHQLSRRAHMPFIAINC 200

Query: 204 RAMSEKRLESELFGLGETEEG--------QQPFLLQADGGTLLLNDILTLPKSQQLNLLR 255
            A+ E   E+ELFG    E+G        +   L  A GGT+ L++I  LP  QQ  LLR
Sbjct: 201 GAIPENIAEAELFG---AEKGAFTGATALKLGKLEAAHGGTVFLDEIGELPLLQQTKLLR 257

Query: 256 FLQEGTVETRQGVRA---VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKE 312
           FLQEGT+ TR G +    +DVR++AA   D+   + +  F E+L++ +NV+ + +P L+E
Sbjct: 258 FLQEGTI-TRVGAQKELQLDVRVIAATHRDLRLEVAEARFREDLFYRLNVVPVLMPPLRE 316

Query: 313 RASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDT 372
           R  DI  L +HFL+ ++ +Y       S  A+R L  Y WPGNVREL N+I+R VL+ D 
Sbjct: 317 RREDIGRLVEHFLKLHASQYGFDQPKISPTALRFLLDYRWPGNVRELSNRIERFVLLGDE 376

Query: 373 VVLDESQLDLPKRSDGRRSLKSIR-ERSERDALLLVLESHSGQVSTAAKELGVS-RATMY 430
             L +      K    +   + I  E  E   L   +    G  + AAK LG+S +A +Y
Sbjct: 377 AELMQVSEHASKEPGLQLPDEGIEWEAFEARCLSQAMARFDGNRTKAAKWLGMSYKAFLY 436

Query: 431 RLLNKHNLI 439
           R L KH L+
Sbjct: 437 R-LEKHRLV 444