Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (544), Expect = 6e-60
 Identities = 142/419 (33%), Positives = 229/419 (54%), Gaps = 20/419 (4%)

Query: 28  LEKVGWRCTQVADLRKADALFVETGPCIGIVDLSHDEFSLNGIANLVSSH-KQVRWLAFI 86
           L   GW C   A   +A          + +  L     +L+    L+ SH   + W+A +
Sbjct: 35  LAAYGWHCLTAASGHEAILKLSGQQLGVAVAMLCPRADTLSSDIALIQSHFPHLLWIA-L 93

Query: 87  REAQLSSDTICQFIVNF-CIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSAGNMG 145
            + +L  D  CQ++++   ID+  +P+    +   +GH  GM KL   +           
Sbjct: 94  TDGKL--DKACQWLLSARFIDYHHSPLDWDSVNKALGHADGMAKL---LPVKTAGVKITD 148

Query: 146 LIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRA 205
           ++G    + RL+  I+++  TD ++L+ GE+GTGK   AK +H+ S+RA  PFI++NC A
Sbjct: 149 ILGTHPCIIRLKQDIQKLASTDETVLLSGETGTGKGLCAKWLHRMSARADGPFIALNCGA 208

Query: 206 MSEKRLESELFG-----LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEG 260
           +    ++S LFG         +   Q  + QA  G L L++I  LP   Q+NLL FL + 
Sbjct: 209 LPNGLIQSTLFGHEKGAFTGADRQYQGHIEQAKDGVLFLDEIADLPLELQVNLLHFLDDR 268

Query: 261 TVETRQGVRA---VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDI 317
            + TR G ++   ++ RI+ A   ++EKA+ DG F E+LYH INVLR++VPSL+E  +++
Sbjct: 269 QI-TRIGGKSPLKINCRIIFATHQNLEKAVDDGTFREDLYHRINVLRLHVPSLREYCTEV 327

Query: 318 VLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDE 377
            L+A+ FL + S     ++ SFSD A+  +  Y WPGNVREL N+I+R V+M++T ++  
Sbjct: 328 RLMAEAFLAQLSPP--NRSLSFSDSAIATMRHYDWPGNVRELQNRIRRAVIMAETSLITP 385

Query: 378 SQLDLPKRSDGR-RSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNK 435
             L L      + R L S R+  + +A+L  +  H   +S AA+ L +SR+T+YRLL K
Sbjct: 386 DDLGLSVAIHAKHRDLVSQRDELDVEAVLKAISDHKHNMSAAARALNISRSTLYRLLKK 444