Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  208 bits (529), Expect = 3e-58
 Identities = 142/424 (33%), Positives = 226/424 (53%), Gaps = 24/424 (5%)

Query: 33  WRCTQVADLRKADALFVETGPCIGIVDLSHDEFSLNGIANLVSSHKQVRWLAFIREAQLS 92
           W     AD  KA  +   T P I I+DL       NG    +++ + +  L  + +  +S
Sbjct: 29  WLIDVAADRAKALEIAARTPPTIVILDLGLPP-EPNGAGEGLATLEGLISLNPLTKVIVS 87

Query: 93  SDT-----ICQFIVNFCIDFFTAP--IPDAQLLSTIGHQLGMLKLEKKVWPHFGSAGNMG 145
           S           I     DF+  P  I   +L++     L  L+ E +     G AG + 
Sbjct: 88  SGNEDHRHALSAIRLGAYDFYPKPVDIEHLRLITARAAHLRRLEEENRQLARAGHAGPLA 147

Query: 146 -LIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCR 204
            +IGES  ++ +   ++R+  T V++L+ GESGTGKE  A ++H+ S RA +PF+++NC 
Sbjct: 148 NVIGESAAIQAVCQMVRRVASTTVNVLLLGESGTGKEVFAHSLHQLSGRAGQPFVAINCA 207

Query: 205 AMSEKRLESELFGLGETEEGQQPFLL--------QADGGTLLLNDILTLPKSQQLNLLRF 256
           A+ E  LESELFG    E+G     L        QA+GGTL L++I  +P   Q  LLRF
Sbjct: 208 AIPENLLESELFG---HEKGAFTGALRQTTGKIQQANGGTLFLDEIGDMPPPLQAKLLRF 264

Query: 257 LQEGTVETRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERA 314
           LQ   +E   G ++  VDVRI++A + D+   +  G+F E+LY+ ++ ++I +P L++R 
Sbjct: 265 LQSRVIERVGGRQSLEVDVRIVSATNRDLGALIEKGEFREDLYYRLDEVKIALPPLRDRI 324

Query: 315 SDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVV 374
            D  LLA++FL  ++     +   FS DA   L+ + WPGNVREL N++KR V++++  +
Sbjct: 325 EDAPLLAQYFLDSFAASMGRKVTGFSSDAQVALSAHPWPGNVRELENRVKRAVVLAEGRL 384

Query: 375 LDESQLDLPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLN 434
           +    +DL        +L+  R R++  A+   L      +S AAK LG+SR T+Y L+ 
Sbjct: 385 VTAKDMDLV--GGAMPTLRESRRRADYQAVTTALLLAGNNLSLAAKYLGISRPTLYDLIE 442

Query: 435 KHNL 438
            HN+
Sbjct: 443 THNI 446