Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  185 bits (470), Expect = 2e-51
 Identities = 119/349 (34%), Positives = 184/349 (52%), Gaps = 31/349 (8%)

Query: 106 DFFTAPIPDAQLLSTIGHQLGM--LKLEKKVWPHFGSAG--NMGLIGESMPMKRLRDQIK 161
           DF   P    +LL+++ H L    L+LE +       A   N+ L+G+S  M+RLR  ++
Sbjct: 98  DFLAKPYAADRLLTSVRHALDKRHLQLENRALRRAAEAASENLPLLGDSPSMERLRKTLR 157

Query: 162 RIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFG---- 217
           +I   DV +L+ GE+G GK+ VA A+H+ S RA +PF++VNC A+ E  +ESELFG    
Sbjct: 158 QIADADVDVLVEGETGAGKDVVANALHRWSRRAARPFVAVNCGALPETVIESELFGHEAG 217

Query: 218 -LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVET--RQGVRAVDVR 274
                 + +   +  A GGTL L++I  +    Q+ LLR L+   +       +R VD+R
Sbjct: 218 AFTGAVKKRVGRIEHAHGGTLFLDEIEAMSPGLQVKLLRVLETREIAPLGTNDIRPVDIR 277

Query: 275 ILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNA 334
           ++AA  +D+   +  G F E+LY+ ++V+ + VP L++R +DIV L  HFL   +K++  
Sbjct: 278 VVAATKTDLPTLVRQGMFREDLYYRLHVVSLRVPPLRDRRADIVPLFAHFLDRAAKQFGR 337

Query: 335 QARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVL-------MSDTVVLDESQLDLPKRSD 387
              +  +   R L  + WPGNVREL +  KRV L        +D +  DE    LP+R D
Sbjct: 338 AVPAIGEAERRHLQTHDWPGNVRELAHFAKRVALGFSDEPDQADPIGQDE---PLPRRVD 394

Query: 388 GRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNKH 436
                       E   +   LE+  G V  A + LG+ R T+Y  L +H
Sbjct: 395 A----------FEAAQIRKALEATQGDVQAACEALGLPRKTLYDKLRRH 433