Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., transcriptional regulatory protein, containing sigma-54 interaction domain from Phaeobacter inhibens DSM 17395

 Score =  193 bits (491), Expect = 8e-54
 Identities = 130/395 (32%), Positives = 209/395 (52%), Gaps = 27/395 (6%)

Query: 57  IVDLSHDEFSLNGIANLVSSHKQVRWLAFIREAQLSSDTIC-----------QFIVNFCI 105
           I+D +H  F L  + N++     + W+    +  L +DT+            Q +     
Sbjct: 59  ILDQAH--FDLIILDNIMPGKTGLEWVQEQHKVGLFADTVLVTAYADLETAIQALRVGVA 116

Query: 106 DFFTAPIPDAQLLSTIGHQLGM--LKLEKKVWPHF----GSAGNMGLIGESMPMKRLRDQ 159
           DF   P    Q+L+++   L    L+ E  +  H     G+A    L+G+S  ++  RD 
Sbjct: 117 DFVLKPFRANQILNSVARALDRKHLRRENYLLKHALSAEGTAARGRLLGKSPAIQTARDM 176

Query: 160 IKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGLG 219
           I R+ P    +L  G SGTGKE  A+ +H  S RA+KPF++VNC A++  R+  ELFG+ 
Sbjct: 177 ITRLAPLPTPVLFTGASGTGKEIAARTLHSLSDRAEKPFVAVNCAAIAPDRIAHELFGVV 236

Query: 220 ETEEGQQPFL-LQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGVRAV--DVRIL 276
           + ++ +Q  L L ADGGTL L+++  +P+  Q  LLR L++  +      R +  ++R L
Sbjct: 237 DAQDRRQDGLFLYADGGTLFLDEVAQMPEQVQAALLRVLEDQRIRPVGAERDIPLNLRFL 296

Query: 277 AANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQA 336
            A ++D+E+A+ +G F  +LYH INV+ I +P L+ER  DIV LA  F++++S      A
Sbjct: 297 FATNADLEQAVSEGRFRADLYHRINVVNIQMPPLRERVEDIVELAALFMEQFSITLAMPA 356

Query: 337 RSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQLDLPKRSDGRRSLKSIR 396
                D +   +RYHWPGNVREL N I+R V++      + +       S    +L  + 
Sbjct: 357 LELDADTLLKFSRYHWPGNVRELRNLIERSVILG-AFPEEFAGTGAVTGSAAMDTLDLVM 415

Query: 397 ERSERDALLLVLESHSGQVSTAAKELGVSRATMYR 431
           +R     ++ VL++  G  + AA+ LGVSR T+ R
Sbjct: 416 QRH----IMHVLDACQGNRAEAARRLGVSRKTVDR 446