Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  204 bits (520), Expect = 4e-57
 Identities = 121/309 (39%), Positives = 191/309 (61%), Gaps = 15/309 (4%)

Query: 144 MGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNC 203
           +GL+G S  M+++  +++R+  TD ++LI GESGTGKE  A+A+++ S+R+ KPF+++NC
Sbjct: 144 VGLVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAARALYQLSARSHKPFVAINC 203

Query: 204 RAMSEKRLESELFGLGE---TEEGQQPF--LLQADGGTLLLNDILTLPKSQQLNLLRFLQ 258
            A+ E   E+ELFG  +   T    Q    L  ADGGT+ L++I  LP  QQ  LLRFLQ
Sbjct: 204 GAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLDEIGELPLLQQTKLLRFLQ 263

Query: 259 EGTVETRQGVRA---VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERAS 315
           EG + +R G  +   +DVR++AA   D+++ + +G F E+LY+ +NV+ I++P+L+ER  
Sbjct: 264 EGVI-SRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYYRLNVVPIHMPALRERPE 322

Query: 316 DIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVL 375
           DI  L +HFL+ ++ +Y  +    S D ++ L  + WPGNVREL N+I+R VL+ D   +
Sbjct: 323 DIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVRELANRIERFVLLGDEEEM 382

Query: 376 DESQLDLPKRSDGRRSLKSIR----ERSERDALLLVLESHSGQVSTAAKELGVS-RATMY 430
            +     P+  D +R +        E  E+D L   L+   G  + AAK LG+S +A +Y
Sbjct: 383 VQELGAAPQPLDTKRFVLPEAGIEWESFEKDCLRQALDRFEGNRTKAAKCLGLSYKAFLY 442

Query: 431 RLLNKHNLI 439
           R L K+ L+
Sbjct: 443 R-LEKYQLV 450