Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  223 bits (568), Expect = 1e-62
 Identities = 142/404 (35%), Positives = 228/404 (56%), Gaps = 20/404 (4%)

Query: 49  VETGPC---IGIVDLSHDEFSLNGIANLVSSHKQVRWLAFIREAQLSSDTICQFIVNFCI 105
           +E+ PC   I I+DL H +  L  I  L +   ++ WLA   ++  +   +C    ++ +
Sbjct: 51  LESAPCQIAIAIIDLPHQQVVLRAIELLSARQPRLLWLAISLDSPKNLGNLCFCFTDYFL 110

Query: 106 DFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSAGNMG--LIGESMPMKRLRDQIKRI 163
           DF   PI   +L  T+GH  GM +L ++ W    +         GES  M+ LRD + +I
Sbjct: 111 DFHHLPIDWQRLDHTLGHLCGMAQLNEQ-WSKEKTTHQPRSFFFGESSVMQTLRDNLYKI 169

Query: 164 GPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFG--LGET 221
             +D ++LI GE+GTGK   A  IH  SSR   PFI+VNC A+    + SELFG   G  
Sbjct: 170 AKSDETVLIGGETGTGKGLCANLIHSLSSRKNGPFITVNCGALPPTLIHSELFGHEKGAF 229

Query: 222 EEGQQPF---LLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGVRA--VDVRIL 276
               + +   + +A+ GTL L++I  L    Q+NLL+FL+E  +E   G ++  VD RI+
Sbjct: 230 TGADRQYIGRIERANKGTLFLDEIGDLSLELQINLLQFLEEHYIERIGGQKSTEVDCRII 289

Query: 277 AANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQA 336
            A   ++E A+ +G F E+L++ IN+++I +PSL+E   DI LLA+ +L + +   N Q 
Sbjct: 290 FATHVNLENAVEEGKFREDLFYRINIIQIELPSLREHKQDIPLLAQDYLTKLAPP-NRQF 348

Query: 337 RSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQLDLP---KRSDGRRSLK 393
           + F  DA+  +T Y WPGNVREL N+I+R ++M+++ ++ E+ L +      +D    + 
Sbjct: 349 Q-FHQDALHAMTNYQWPGNVRELKNRIQRAIIMTESDIITEADLGIKFACSANDDPDVVD 407

Query: 394 SIRERSERDA--LLLVLESHSGQVSTAAKELGVSRATMYRLLNK 435
             + R+E D   LL  ++ ++  +S AA+EL +SR T YRL+ K
Sbjct: 408 LAQHRTEIDTELLLAAIKRNNHNISAAARELNISRTTFYRLIKK 451