Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  186 bits (473), Expect = 1e-51
 Identities = 118/366 (32%), Positives = 192/366 (52%), Gaps = 24/366 (6%)

Query: 94  DTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLG---MLKLEKKVWPHFGSAG-NMGLIGE 149
           +T    + N   DF T P+    L   +   L    +L+  +++       G    LIGE
Sbjct: 92  ETAVTALKNGAYDFLTKPVRREDLYRAVSKGLERCRLLRENRQLREEMSRTGMERTLIGE 151

Query: 150 SMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEK 209
           +  M+RL++ I  +  +D ++L+ GESGTGKE VA +IH  S RAQ+P +SV+C A+ ++
Sbjct: 152 TPAMRRLKETIAAVAASDYTVLVRGESGTGKELVAASIHALSGRAQRPIVSVHCPAIPDQ 211

Query: 210 RLESELFG-----LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVET 264
            LESELFG         E  ++   + A GGT++L++I  +    Q  LLR LQE  +  
Sbjct: 212 LLESELFGHVKGAFTGAERSRKGLFMSAAGGTIVLDEIGDISPGIQTKLLRVLQEHEIRP 271

Query: 265 --RQGVRAVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAK 322
               G   VDVRI+A+ +  +E  +  G+F E+L++ +NVL I+ P L++RA DI LLA 
Sbjct: 272 VGSSGTVKVDVRIIASTNQALEARIKSGEFREDLFYRLNVLTIHTPPLRDRADDIPLLAD 331

Query: 323 HFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQLDL 382
           HFL +  +E    A+  S +A+  L    WPGNVREL N ++R+ +      ++ + L L
Sbjct: 332 HFLVQTCREMQIAAKRLSPEAMACLCGREWPGNVRELQNFVRRLAVFCPGPTVEMAHLRL 391

Query: 383 -------------PKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATM 429
                        P  +  + +   + +   R  +  +LE   G +S AA+  G+ R ++
Sbjct: 392 VDGPADCAAPVTEPTLTPYKDAKAHVVDEFTRRYVERLLERTEGNISEAARISGLERVSL 451

Query: 430 YRLLNK 435
            ++L +
Sbjct: 452 QKILRR 457