Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  208 bits (530), Expect = 3e-58
 Identities = 135/397 (34%), Positives = 206/397 (51%), Gaps = 44/397 (11%)

Query: 86  IREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKL---EKKVWPHFGSAG 142
           I  A  S DT  + +     D+   P+    L  T+   L   +L    +++     S G
Sbjct: 80  IMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHTRLASENRELRERLSSQG 139

Query: 143 NMG-------LIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQ 195
             G       +IG S PM  L + I  + P++ ++LI GESGTGKE VA+A+H  S R+ 
Sbjct: 140 GAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGESGTGKELVARALHAASHRSA 199

Query: 196 KPFISVNCRAMSEKRLESELFG-----LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQ 250
           KP ++VNC A++E  LESELFG         +  ++   +QADGGTL L++I  +P + Q
Sbjct: 200 KPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQADGGTLFLDEIGEMPLTLQ 259

Query: 251 LNLLRFLQEGTVET--RQGVRAVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVP 308
             LLR LQ+G V+         VDVR++AA + D+ +    G F E+LY+ +NV+ ++VP
Sbjct: 260 AKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAGRFREDLYYRLNVIAVHVP 319

Query: 309 SLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVL 368
           +L+ERA D+ LLA  FL  Y+++     + F+  A+  L R+ WPGNVREL N I+R V+
Sbjct: 320 ALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRHDWPGNVRELENAIERAVI 379

Query: 369 MSDTVVLDESQLDL--------------------------PKRSDGRRSLKSIR-ERSER 401
           ++    + E +L L                          P   DG      +  E  ER
Sbjct: 380 LATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAPADGDGLAPYAGLSLEDLER 439

Query: 402 DALLLVLESHSGQVSTAAKELGVSRATMYRLLNKHNL 438
            A++  L   +   S AA+ LG++RAT++  L K++L
Sbjct: 440 RAIIATLRETADNKSEAARRLGITRATLHNKLKKYDL 476