Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  197 bits (500), Expect = 8e-55
 Identities = 130/359 (36%), Positives = 194/359 (54%), Gaps = 25/359 (6%)

Query: 106 DFFTAPIPDAQLLSTIGHQL--GMLKLEKKVWPHFGSAGNMG--LIGESMPMKRLRDQIK 161
           DF T PI    L   +G  +  G+L  E        + G++G  LIG+S  M+RLR  I 
Sbjct: 108 DFLTKPIDQEHLFRVVGKAMERGVLLRENGRLRQKAADGDLGPMLIGKSPAMQRLRKSIA 167

Query: 162 RIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFG---- 217
            +  +D ++LI GESGTGKE VA+A+   S RA  PFI VNC A+ +  LESELFG    
Sbjct: 168 AVAASDYTVLIRGESGTGKELVARAVQSLSQRADGPFIMVNCPAIPDALLESELFGHVKG 227

Query: 218 -LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVE---TRQGVRAVDV 273
                +  ++   + AD GT+LL++I  +P S Q  LLR +QEG V    T +  R V+V
Sbjct: 228 AFTGADRNRKGLFMAADKGTILLDEIGDIPASVQSKLLRVIQEGEVRPVGTNEAQR-VNV 286

Query: 274 RILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYN 333
           RI+A+ + ++E  + DG F E+LY  +NVL INVP L+ER  DI  +A HFL     E  
Sbjct: 287 RIVASTNRNLEAKIADGSFREDLYFRLNVLTINVPPLRERIEDIPHIASHFLFRVCNELG 346

Query: 334 AQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQLDL--------PKR 385
              + FS++A+  L+   WPGNVREL+N ++R+ +      ++ + +          P+ 
Sbjct: 347 VPEKEFSNEALSYLSCRPWPGNVRELLNLVRRMAVFCPGERIEGAFIHRMEHGADTEPEC 406

Query: 386 SDGRRSLKSIR----ERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNKHNLIT 440
             G    K  +    +   R  +  +LE   G +S AA+  GV R T+ ++L + ++ T
Sbjct: 407 GAGFSPYKDAKQVAVDEFTRSYVHRLLEHTHGNISEAARLSGVERFTLQKILKRMHIDT 465