Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  188 bits (478), Expect = 3e-52
 Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 25/310 (8%)

Query: 146 LIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRA 205
           + G+  PM+R+   I+++ PT+ ++LI GESGTGKE  A+A+H  S RA KP ISVNC A
Sbjct: 142 MFGQCEPMQRVFTLIRKVAPTETTVLIQGESGTGKELAARALHLLSPRAAKPLISVNCAA 201

Query: 206 MSEKRLESELFGLGE-----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEG 260
           + E  +ESELFG  +         +   +  ADGG+L L++I  LP   Q  LLR LQE 
Sbjct: 202 IPESLIESELFGHEKGAFTGAVSARTGLIEAADGGSLFLDEIGELPAEAQARLLRVLQES 261

Query: 261 TVETRQGV--RAVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIV 318
            +        R V+VR++AA   +++     G+F E+LY+ +NV++I +P L+ER SDI+
Sbjct: 262 EIRKVGSTQSRTVNVRMIAATHRNLKAMTRTGEFREDLYYRLNVMQIRIPPLRERQSDIL 321

Query: 319 LLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDES 378
            LA+ FL+   +       + S +A+R L R+ WPGNVREL N I+R  ++ D  V+  S
Sbjct: 322 GLARRFLKRQGERMGKPDLNLSPEAMRALERHRWPGNVRELENAIERATILCDGDVITPS 381

Query: 379 QLDLPKRS----------DGRRSLKSIRERSERDALLL-------VLESHSGQVST-AAK 420
            LDL              DG       RE    + L L       VLE+      T  A+
Sbjct: 382 LLDLDSEGSDEYIPETLVDGNNEQTHTREVDASNDLSLEDYFQHFVLENQDRMSETELAQ 441

Query: 421 ELGVSRATMY 430
           +LG+SR +++
Sbjct: 442 KLGISRKSLW 451