Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  214 bits (546), Expect = 3e-60
 Identities = 125/351 (35%), Positives = 214/351 (60%), Gaps = 15/351 (4%)

Query: 106 DFFTAPIPDAQLLSTI---GHQLGMLKLEKKVWPHFGSAGNM-GLIGESMPMKRLRDQIK 161
           DF+  P+ DA +L+ +     +L  L+ E +   +  +A N+ G++  S  M ++   ++
Sbjct: 86  DFYQKPL-DADILTFVVDRAFRLYELERENRELANQQNATNIKGIVAASPQMLQVCRTLE 144

Query: 162 RIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGLGE- 220
           +I PTDV+ LI GE+GTGKE +A+A+H  S RA KPF ++NC A+ E  LESELFG  + 
Sbjct: 145 KIAPTDVTTLINGETGTGKELLARALHDLSPRASKPFAAINCAAIPEALLESELFGYEKG 204

Query: 221 ----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGVR--AVDVR 274
                 + ++  +  A+GGTL L++I  +P + Q  LLRFLQE  ++    +   +VDVR
Sbjct: 205 AFTGATQNKKGKIESANGGTLFLDEIGDMPFALQAKLLRFLQERMIDRVGAIEPISVDVR 264

Query: 275 ILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNA 334
           ++ A   ++ + +  G+F E+LY+ I+ + ++VP+L++R  D ++LA+  L+   KE + 
Sbjct: 265 VICATHRNLNQLIEGGEFREDLYYRISEITLDVPALRDRDGDALVLAQSLLKSIGKELDR 324

Query: 335 QARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSD--TVVLDESQLDLPKRSDGR-RS 391
              SF++DA+  +  Y WPGNVRE++N++KR ++M++   V  ++  L      D +  +
Sbjct: 325 PNLSFAEDAISAVNNYPWPGNVREMINKVKRAIIMAEGKRVTAEDLSLQATSTQDEKCLN 384

Query: 392 LKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNKHNLITDE 442
           L+ IRE +ER AL   L+     ++ AA+ LG++R T+Y L +K+N+ T E
Sbjct: 385 LRQIRETAERRALNQALQVSGFNMARAARLLGITRPTIYSLTDKYNIETSE 435