Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  202 bits (515), Expect = 1e-56
 Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 19/313 (6%)

Query: 142 GNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISV 201
           G  G++G    M+ + + + ++  T   +L+ GESGTGKE VA+AIH    R  + F+++
Sbjct: 165 GWQGIVGRCPSMRAVFETVAKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAI 224

Query: 202 NCRAMSEKRLESELFGL------GETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLR 255
           NC A+ +  LE+E FG       G T+  Q   +  ADGGTL L++I  LP + Q+ LLR
Sbjct: 225 NCGAIPDNLLEAEFFGYEKGAFTGATQRVQGK-VEYADGGTLFLDEIGELPANLQVKLLR 283

Query: 256 FLQEGTVETRQGVR--AVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKER 313
           FLQE  ++   G +  AVD RI+AA + DI+  +  G F E+LY+ I V+ + +P L+ R
Sbjct: 284 FLQEKVIQRVGGRKDIAVDARIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRAR 343

Query: 314 ASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVV------ 367
             DI+LLA+HFL+  + E       FS  A + + RY WPGNVREL N+++R V      
Sbjct: 344 GDDILLLARHFLESSAGEGTGNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGR 403

Query: 368 -LMSDTVVLDESQLD-LPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVS 425
            +M D +  DE+       R +G  SL+  R   ERD +L  L+   G +  A+  +GVS
Sbjct: 404 RIMPDDLGFDETPAKAAAPRPEG--SLREARNALERDMVLSALDKCGGNIVQASLAIGVS 461

Query: 426 RATMYRLLNKHNL 438
           R T Y LL KH +
Sbjct: 462 RPTFYDLLRKHGI 474