Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  187 bits (474), Expect = 8e-52
 Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 37/363 (10%)

Query: 106 DFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSA----GNMGLIGESMPMKRLRDQIK 161
           D+ T P  + +LL ++ +   + ++ ++      +     G   +IG S  ++ + D + 
Sbjct: 101 DYITKPFSNDELLLSVQNAAELSRVHRQYRALRANLEERYGTHQIIGRSKAIREVLDMVD 160

Query: 162 RIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGLGET 221
           R  P+  ++LI GESGTGKE VA+AIH +S R   PF+SVNC A++   LESELFG    
Sbjct: 161 RAAPSRSTVLITGESGTGKELVARAIHFSSPRNSGPFVSVNCMALNPGVLESELFG---H 217

Query: 222 EEGQQPFLL--------QADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGVRA--V 271
           E+G     +        QADGGTL L++I  L    Q+ LLR LQE   E   G     V
Sbjct: 218 EKGSFTGAMAMRRGRFEQADGGTLFLDEIGELTPELQVKLLRVLQERRFERVGGGDEIEV 277

Query: 272 DVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKE 331
           D+R++AA + D++K + +G F E+LY+ +NV+ + +P L+ER  DI LL  HF+++ +++
Sbjct: 278 DIRVVAATNKDLQKEVENGTFREDLYYRLNVVHVALPPLRERREDIPLLVGHFVEKLARD 337

Query: 332 YNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKR--VVLMSDTVVLD---------ESQL 380
              + ++F+ +A   LT Y WPGN+R+L N ++R  V++ SDTV +D         ESQL
Sbjct: 338 NGMKPKTFTPEAHDYLTGYEWPGNIRQLQNVVERCLVLVASDTVGVDDLPPEIRDEESQL 397

Query: 381 D-----LPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNK 435
                 LP R D   +L+ I     R AL   + +   QV  AA+ LG+S++ +   L K
Sbjct: 398 KSAVDLLPVRLDLADTLEKIEAALIRRAL---VRAEFVQVK-AAELLGISKSLLQYKLKK 453

Query: 436 HNL 438
           + +
Sbjct: 454 YGI 456