Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  196 bits (497), Expect = 2e-54
 Identities = 128/359 (35%), Positives = 194/359 (54%), Gaps = 27/359 (7%)

Query: 106 DFFTAPIPDAQLLSTIG----HQLGMLKLEKKVWPHFGSAGNMGLIGESMPMKRLRDQIK 161
           D+ T P  + +L++ +     H+  +++ E+    +  +     L+G S  M R+RD I+
Sbjct: 98  DYLTKPADNEELVAVLEKAWEHRRLVVENEELRKRYVENDPTAPLVGASQVMHRMRDFIR 157

Query: 162 RIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFG---- 217
           + GP++ ++LI GESGTGKE +A+A+H  S+RA++P + VNC A+    LESELFG    
Sbjct: 158 QAGPSEATVLIMGESGTGKELIAQALHDASTRARQPLVKVNCAALPGHLLESELFGYVRG 217

Query: 218 --LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGVR--AVDV 273
              G  ++    F L A GGTL L++I  LP   Q  LLR LQE  VE   GVR  +VDV
Sbjct: 218 AFTGAVKDKPGRFQL-ARGGTLFLDEIGELPLELQAKLLRVLQERVVEPLGGVRPVSVDV 276

Query: 274 RILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYN 333
           RI+AA + D+ + +  G F E+LY  +NVL +  P L++R  D+  L +  L +  ++  
Sbjct: 277 RIIAATNRDLRREVAKGTFREDLYFRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNR 336

Query: 334 AQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQL------DLPKRSD 387
              R  S D    L+R+ WPGNVREL N ++R +++S T  L    L      D P+ +D
Sbjct: 337 KSIRCISADFFEALSRHSWPGNVRELENVLERALILSRTDSLSADALPPQLFGDEPQVAD 396

Query: 388 GRRSLKSIRERS--------ERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNKHNL 438
            ++    + + S        E+  LL  L+ H G     A  LG+SR T+   L K  L
Sbjct: 397 MQQERPVVDDDSRPCSLDEAEKGELLRALDVHGGHREKTADALGISRRTLQYKLKKFGL 455