Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  188 bits (477), Expect = 4e-52
 Identities = 117/316 (37%), Positives = 179/316 (56%), Gaps = 18/316 (5%)

Query: 136 PHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQ 195
           P  G+ G  GL+G S  M+R+   ++ + PTD ++L+ GESGTGKE VA+A+H    RA 
Sbjct: 257 PPGGAPGEWGLVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEALHNAGPRAT 316

Query: 196 KPFISVNCRAMSEKRLESELFG------LGETEEGQQPFLLQADGGTLLLNDILTLPKSQ 249
            P I VNC A+ E  LESELFG       G   +    F L A GGT+ L++I  L    
Sbjct: 317 GPLIKVNCAALPETLLESELFGHVRGAFTGALRDRVGRFQL-AHGGTIFLDEIGDLSPQV 375

Query: 250 QLNLLRFLQEGTVETRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINV 307
           QL LLR LQE   E     R   VDVR++AA   ++ + +  G F E+LY+ + V+ +++
Sbjct: 376 QLRLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYRLRVVELHM 435

Query: 308 PSLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVV 367
           P L+ER  D+ LLA+HF+  ++++++     F++ A R L  + WPGNVREL + ++   
Sbjct: 436 PPLRERHEDLALLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNVRELRHAVEHGF 495

Query: 368 LMSDTVVLDESQLDLPKRSDGRRSLKSIRERSERD-----ALLLVLESHSGQVSTAAKEL 422
           ++     +D +  DLP    G  +  S+  R+ER      A+   L+   G  + AA+ L
Sbjct: 496 ILCKGERIDLA--DLPPDVQGTEA--SVFPRAERSGVHEAAVREALKKAGGNKARAARLL 551

Query: 423 GVSRATMYRLLNKHNL 438
           GV+R T+YR L ++ +
Sbjct: 552 GVARQTLYRKLAEYGI 567