Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., AAA-family response regulator tacA from Caulobacter crescentus NA1000

 Score =  187 bits (476), Expect = 5e-52
 Identities = 127/400 (31%), Positives = 204/400 (51%), Gaps = 56/400 (14%)

Query: 94  DTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSAGNM----GLIGE 149
           DT+ + +     DFF  P    ++  +I + L M  L+ +V      AG       LIG 
Sbjct: 88  DTVVKAMQAGACDFFIKPASPERITVSIRNALSMGDLKGEVERLTKRAGGKTTFADLIGA 147

Query: 150 SMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEK 209
           S  M  ++   +R   + + +LI GESG GKE +A+A+H +S RA KPF++VNC A+ E 
Sbjct: 148 SPVMTMVKRMGERAAKSGIPVLITGESGVGKELIARAVHGSSDRAGKPFVAVNCGAIPEN 207

Query: 210 RLESELFG------LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVE 263
            +ES LFG       G T++    F  +ADGGTL L+++  LP   Q+ LLR LQEG ++
Sbjct: 208 LVESILFGHEKGSFTGATDKHLGKFK-EADGGTLFLDEVGELPLDMQVKLLRALQEGEID 266

Query: 264 TRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLA 321
                R+  VDVRI++A + D+++A+  G F E+L++ +NV  I  PSL+ER  DI  L 
Sbjct: 267 PIGSKRSIKVDVRIVSATNRDLQQAVSGGRFREDLFYRLNVFPIEAPSLRERREDIPALV 326

Query: 322 KHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQLD 381
           + F++ ++ E   +    S + ++ LT + WPGNVR+L N + R ++++D   L     D
Sbjct: 327 EAFIRRFNVEEGKRVIGASPETMQLLTSFDWPGNVRQLENTVYRAIVLADAPYL--QPFD 384

Query: 382 LPKRS----------------------------------------DGRRSLKSIRERSER 401
            P  S                                        D R  L+++ E  ER
Sbjct: 385 FPAISGLAAPIEAVSISPSPPPAALLQATHAAMAAAVAEAPVRILDDRGHLRTL-EEIER 443

Query: 402 DALLLVLESHSGQVSTAAKELGVSRATMYRLLNKHNLITD 441
           D +   ++ ++G +S  A+ LG+ R+T+YR + +  +  D
Sbjct: 444 DLIQHAIDVYAGHMSEVARRLGIGRSTLYRKVREQGIEVD 483