Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  221 bits (563), Expect = 4e-62
 Identities = 144/424 (33%), Positives = 226/424 (53%), Gaps = 25/424 (5%)

Query: 28  LEKVGWRCTQVADLRKADALF--VETGPCIGIVDLSHDEFSLNGIANLVSSHKQVRWLAF 85
           L++  W C +     +A  L    E    I  +  ++       IA + + +  + W+A 
Sbjct: 34  LKQAAWNCVKAVSAAEALVLLQKYELRVAIAFISDTNQTALAKEIAIIQAEYPSLHWIA- 92

Query: 86  IREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSAGNMG 145
           + ++ L          NF +D++  P    +   T+GH  GM +L     P  G  G   
Sbjct: 93  VTDSALEQHCSWLSAANF-VDYYHRPFDWNRFADTLGHAWGMAQLT----PSKGGKGPAK 147

Query: 146 LI----GESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISV 201
           ++    GE   +++LR ++ +   +D ++L+ GE+G+GK   AK +H  S R + PFI+V
Sbjct: 148 VLTTIKGEHPLLQQLRQRLHKFSQSDETVLLSGETGSGKGLCAKTLHSLSKRHEGPFITV 207

Query: 202 NCRAMSEKRLESELFG-----LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRF 256
           NC A+    + S LFG       + ++     L QA GGTL L++I  LP   Q+NLL F
Sbjct: 208 NCGALPTGLIHSTLFGHEKGAFTDADKRYIGHLEQAHGGTLFLDEIADLPLDLQVNLLHF 267

Query: 257 LQEGTVETRQGVRA---VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKER 313
           L +  +  R G  A   VD R+L A+  D+E A+ +G F E+LYH INVLR++VPSL++ 
Sbjct: 268 LDDKHI-MRIGGNAPIKVDCRLLFASHQDLEAAIDEGRFREDLYHRINVLRLHVPSLRQY 326

Query: 314 ASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTV 373
           + +++LLA+ FL E+S   N     FSD+A   +  Y+WPGNVREL N+I+R ++++D  
Sbjct: 327 SDEVMLLAEQFLLEHSD--NCTQFHFSDEARCAMKHYNWPGNVRELRNRIRRAMVLTDDC 384

Query: 374 VLDESQLDLPKRSDGRRSLKSIRERSERDA--LLLVLESHSGQVSTAAKELGVSRATMYR 431
           ++    L L   +  R S    R R+E +A  LL  +  H   +S AA+ L +SRAT YR
Sbjct: 385 IITAQLLGLDSLTANRTSQDLARCRAEHEAEVLLKAISDHKHNISAAARSLNISRATFYR 444

Query: 432 LLNK 435
           LL K
Sbjct: 445 LLKK 448