Pairwise Alignments

Query, 510 a.a., lysine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., aspartyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 21/252 (8%)

Query: 86  FLVIQETSGRIQAYASKEVQQELKDKYQGLDIGDIIGVQGALHKSGKGDLYVNME--QFQ 143
           FL +++  G +Q     ++  E+ +    L     + V+G +       +   M+  + +
Sbjct: 35  FLDLRDREGLVQVVYDPDLP-EVFNVASTLRAEFCVQVKGVVRARPDSQVNAQMKTGEIE 93

Query: 144 LLTKAL------RPLPEKFHGLTD--QEMRYRQRYVDLIVNENSRNAFIVRSKVMSAIRN 195
           +L KAL       PLP       +  +E R + RY+DL   E ++   + R+KV SA+R 
Sbjct: 94  VLGKALTIINSSEPLPLSLDNYQNNSEEQRLKYRYLDLRRPEMAQR-LMFRAKVTSAVRR 152

Query: 196 FMISKQFMEVETPMM-HVIPGGASARPFITHHNALDMPMY-LRIAPELYLKRLVVGGFDR 253
           F+ S  F+++ETP++    P GA  R ++          + L  +P+L+ + L++ GFDR
Sbjct: 153 FLDSNGFLDIETPILTKATPEGA--RDYLVPSRTYKGQFFALPQSPQLFKQLLMMSGFDR 210

Query: 254 VFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKDLMDLTEELLSSVALEVLG-----ST 308
            ++I + FR+E L     PEFT ++   ++   + +M+ TEE++  + LE+L        
Sbjct: 211 YYQIVKCFRDEDLRADRQPEFTQIDIETSFMTSEQVMNKTEEMMRGLFLEMLNVDLGEFP 270

Query: 309 SMPYGEHTVEFG 320
            M Y E    FG
Sbjct: 271 RMTYNEAMRRFG 282



 Score = 57.0 bits (136), Expect = 2e-12
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 399 PADISPLARRSDDNPFFTDRFEFFIGGREVANGFSELNDAEDQDARFKAQVEAKESGDDE 458
           P  ++P    ++     +D ++  + G E+  G   +++ E Q A F+      E   ++
Sbjct: 454 PRGVTPQELEANPANRVSDAYDMVLNGCELGGGSVRIHNQEMQSAVFRILGITDEEAKEK 513

Query: 459 AMFYDADYITALEHGLPPTAGQGIGIDRLVMLLTNTHTIRDVILFP 504
             F     + AL +G PP AG   G+DR++ML+T   +IRDV+ FP
Sbjct: 514 FGFL----LEALRYGTPPHAGLAFGLDRIIMLMTGASSIRDVMAFP 555