Pairwise Alignments

Query, 437 a.a., branched-chain amino acid transport system II carrier protein from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., branched-chain amino acid transport system II carrier protein (RefSeq) from Shewanella loihica PV-4

 Score =  434 bits (1116), Expect = e-126
 Identities = 229/431 (53%), Positives = 298/431 (69%), Gaps = 14/431 (3%)

Query: 5   LKLADILALGFMLFAFFLGAGNIIFPPLAGQLAGENITPAMFGFLLTAVGLPLITIIAIA 64
           L + D L LGFM FAFFLGAGN+IFPPLAG LAGEN++ AM GFLLTAV LPL+T+IA+A
Sbjct: 6   LSMTDTLGLGFMTFAFFLGAGNLIFPPLAGFLAGENMSWAMIGFLLTAVTLPLVTLIAVA 65

Query: 65  VAGGSWEHLTKDLPVKASVLMAALILIVIGPAFAAPRTGLVAYEMAVKPFFAESTQSYLT 124
            A G    L   LP  A+ ++A  I I+IGPAFAAPR GLVAYEM  KPF  ++  S+  
Sbjct: 66  KANGKVMGL---LPPLAATMLAIAIYIIIGPAFAAPRAGLVAYEMGYKPFIQDAQASFEV 122

Query: 125 ----------LFSVLFFAVAMFFSWSQGKLVDLIGKLLTPALFICLIILALGVFMNPQGE 174
                     L++ +FF +AM  S   GKL+D +GK+LTP + I L+ LA+ V + P  +
Sbjct: 123 AGVVFTSSQLLYTSIFFGIAMLLSLFPGKLLDSVGKVLTPIMIILLVGLAISVVVLPGSD 182

Query: 175 MIAAQGEYLSQPLTKGFLEGYNTMDTFASLMFGILIVDALRSKGITDRAATTRYLITSAV 234
           + AA G+Y + PLTKG +EGYNTMDT ASL+FG+LI+D LR KG+      T+YL+ +A 
Sbjct: 183 VAAAVGDYQTNPLTKGIIEGYNTMDTLASLIFGMLIIDLLRKKGVDSPREQTKYLVRAAF 242

Query: 235 IAAIGLALVYGSLFYLGATSSSVAAGANNGGAILSQYVQALFGSYGQLVLSVIVMLACLT 294
           IAA GLA VY SLFYLGAT+  +A GA+NGG IL+ YV   FG+ GQL+L+ +V LACLT
Sbjct: 243 IAAGGLAFVYVSLFYLGATAGDLAVGADNGGVILTNYVNYQFGASGQLLLAAVVTLACLT 302

Query: 295 TAVGLISACSDFFSK-HTSLSYKQWVVINGVACGVVANVGLAQLITLSIPVLFALYPVAI 353
           T VGL+SAC+++F++   SLSYK  VV+  V C VVANVGLAQLI +SIPVL  +YPVAI
Sbjct: 303 TVVGLVSACAEYFNELMPSLSYKLLVVVMSVTCAVVANVGLAQLINISIPVLVTIYPVAI 362

Query: 354 ALVALTFVRHKLPNPRVAYRAVLSVSLLVALLDAAKVAGFDVSAFSFLPFFEYGMGWLLP 413
           ALVA+T++  +   P  A+R VLSV+L+  ++D  K AG ++S F  +P    GM WL+P
Sbjct: 363 ALVAVTYLTERFAQPAFAHRMVLSVALVFGIIDGLKAAGVNMSMFDVMPLSAQGMAWLIP 422

Query: 414 TCAAMICMFFI 424
           T   +     +
Sbjct: 423 TAITIFACLMV 433