Pairwise Alignments

Query, 437 a.a., branched-chain amino acid transport system II carrier protein from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  423 bits (1088), Expect = e-123
 Identities = 236/454 (51%), Positives = 297/454 (65%), Gaps = 37/454 (8%)

Query: 5   LKLADILALGFMLFAFFLGAGNIIFPPLAGQLAGENITPAMFGFLLTAVGLPLITIIAIA 64
           +   D L LGFM FAFFLGAGN+IFPP AG LAGEN+  AM GFL+TAVGLPL+ +IA+A
Sbjct: 1   MSFGDTLGLGFMTFAFFLGAGNLIFPPFAGMLAGENMLLAMLGFLITAVGLPLVGLIAVA 60

Query: 65  VAGGSWEHLTKDLPVKASVLMAALILIVIGPAFAAPRTGLVAYEMAVKPFFAESTQSYLT 124
            A G    +   LPV A+  +A  I I+IGPAFAAPRTGLVAYE+  KPF   +T + + 
Sbjct: 61  KAQGK---VMAMLPVFAATALAIAIYIIIGPAFAAPRTGLVAYEIGAKPFIDNTTATIML 117

Query: 125 ----------LFSVLFFAVAMFFSWSQGKLVDLIGKLLTPALFICLIILALGVFMNPQGE 174
                     ++++ FF V M  +   GKL+D +GK+LTP L + L+ LAL V   P  E
Sbjct: 118 GSLSLNLSQLIYTLGFFIVTMLLALFPGKLLDSVGKVLTPILLLLLVGLALSVLFLPASE 177

Query: 175 MIAAQGEYLSQPLTKGFLEGYNTMDTFASLMFGILIVDALRSKGITDRAATTRYLITSAV 234
           +  A G+Y + PLTKG LEGYNTMDT ASLMFG+LI+D LR KGI   +A T+YLI +A 
Sbjct: 178 VGVAVGDYKNHPLTKGILEGYNTMDTLASLMFGMLIIDLLRKKGIEQPSAQTKYLIRAAF 237

Query: 235 IAAIGLALVYGSLFYLGATSSSVAAGANNGGAILSQYVQALFGSYGQLVLSVIVMLACLT 294
           IAA GLA VY SLF+LGAT+  +AAGA NGG IL+ YV   FGS G ++LS +V LACLT
Sbjct: 238 IAAAGLAFVYVSLFFLGATAGDIAAGAKNGGEILTNYVTREFGSLGTVLLSAVVTLACLT 297

Query: 295 TAVGLISACSDFFSK-HTSLSYKQWVVINGVACGVVANVGLAQLITLSIPVLFALYPVAI 353
           TAVGL+SACS+FF++    LSY+  VV     C ++ANVGL+QLI +SIPVL A+YPVAI
Sbjct: 298 TAVGLVSACSEFFNELMPKLSYRFLVVALSAICALIANVGLSQLINISIPVLMAVYPVAI 357

Query: 354 ALVALTFVRHKLPNPRVAYRAVLSVSLLVALLDAAKVA--------GFDVSAF------- 398
           ALVA+TF+    P P+ A+RA LSV+LL  + D  KVA        G  ++ F       
Sbjct: 358 ALVAVTFLTEYFPRPQFAHRAALSVALLFGIFDGMKVAAKSLTGEDGRGITEFAQSFIDF 417

Query: 399 --------SFLPFFEYGMGWLLPTCAAMICMFFI 424
                   S LP +E GM WLLPT   ++    I
Sbjct: 418 VNGMSPTLSILPLYEEGMAWLLPTLVVIVLCLII 451