Pairwise Alignments

Query, 437 a.a., branched-chain amino acid transport system II carrier protein from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., branched-chain amino acid transport system II carrier protein (RefSeq) from Shewanella sp. ANA-3

 Score =  429 bits (1103), Expect = e-125
 Identities = 235/454 (51%), Positives = 299/454 (65%), Gaps = 37/454 (8%)

Query: 5   LKLADILALGFMLFAFFLGAGNIIFPPLAGQLAGENITPAMFGFLLTAVGLPLITIIAIA 64
           + + D L LGFM FAFFLGAGN+IFPP AG LAGEN+  AM GFL+TAVGLPL+ +IA+A
Sbjct: 6   MSIGDTLGLGFMTFAFFLGAGNLIFPPFAGMLAGENMPLAMLGFLITAVGLPLVGLIAVA 65

Query: 65  VAGGSWEHLTKDLPVKASVLMAALILIVIGPAFAAPRTGLVAYEMAVKPFFAESTQSYLT 124
            A G    +   LPV A+  +A  I I+IGPAFAAPRTGLVAYE+  KPF   +T + + 
Sbjct: 66  KAQGK---VMAMLPVFAATALAIAIYIIIGPAFAAPRTGLVAYEIGAKPFIDNTTATIML 122

Query: 125 ----------LFSVLFFAVAMFFSWSQGKLVDLIGKLLTPALFICLIILALGVFMNPQGE 174
                     ++++ FF V M  +   GKL+D +GK+LTP L + L+ LAL V   P G+
Sbjct: 123 GSLSLNLSQLIYTLCFFTVTMLLALFPGKLLDSVGKVLTPILLLLLVGLALSVVFLPAGD 182

Query: 175 MIAAQGEYLSQPLTKGFLEGYNTMDTFASLMFGILIVDALRSKGITDRAATTRYLITSAV 234
           + AA G+Y + PLTKG LEGYNTMDT ASLMFG+LI+D LR KGI   +A T+YLI +A 
Sbjct: 183 VGAAVGDYQNHPLTKGILEGYNTMDTLASLMFGMLIIDLLRKKGIDQPSAQTKYLIRAAF 242

Query: 235 IAAIGLALVYGSLFYLGATSSSVAAGANNGGAILSQYVQALFGSYGQLVLSVIVMLACLT 294
           IAA GLA VY SLF+LGAT+  +A GA NGG IL+ YV   FGS G ++LS +V LACLT
Sbjct: 243 IAAAGLAFVYVSLFFLGATAGDIAVGAKNGGEILTNYVTREFGSLGTVLLSTVVTLACLT 302

Query: 295 TAVGLISACSDFFSK-HTSLSYKQWVVINGVACGVVANVGLAQLITLSIPVLFALYPVAI 353
           TAVGL+SACS+FF++    LSY+  VV+    C ++ANVGL+QLIT+SIPVL A+YPVAI
Sbjct: 303 TAVGLVSACSEFFNELMPKLSYRFLVVLLSAICALIANVGLSQLITISIPVLMAVYPVAI 362

Query: 354 ALVALTFVRHKLPNPRVAYRAVLSVSLLVALLDAAKVAGFDVS----------------- 396
           ALVA+TF+    P P+ A+RA LSV+LL  + D  KVA   ++                 
Sbjct: 363 ALVAVTFLTEYFPRPQFAHRAALSVALLFGIFDGMKVAAKSLTGEDGKGVTEAAQSFIDL 422

Query: 397 ------AFSFLPFFEYGMGWLLPTCAAMICMFFI 424
                   S LP +E GM WLLPT   ++    I
Sbjct: 423 VSGMSPTLSILPLYEEGMAWLLPTLVVIVLCLII 456