Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas fluorescens FW300-N2E2

 Score =  300 bits (768), Expect = 6e-86
 Identities = 181/425 (42%), Positives = 246/425 (57%), Gaps = 16/425 (3%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F+   L   LL+A+ E+ F  PT VQA AIP AL GRD+  +A TG+GKTAAFV+P L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L+  P +     + LIL PTRELA Q  ++ +  ++ T +    ITGG  ++  A +L  
Sbjct: 62  LIG-PAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI++ TPGR++E ++A   D + +E L+LDEADRMLDMGF   V RL  EC  R+QT+
Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECVNRQQTM 180

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL-T 243
           LFSAT  G G+    A +L +P H+      +      Q    AD   HK +++  +L  
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLAN 240

Query: 244 EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           E  E++IVF  TR     +   L   +     + GE  Q  R  AI R ++G V IL+AT
Sbjct: 241 ETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARG+DV  +  VINFD+PRS D Y+HRIGRTGRAG  G+AISL+   D  +M+ +ER
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360

Query: 364 YIKEEVKERFIDGLR-----PKHKKPVFK----KKKK-----DIKKTADKGAVKKKTTSK 409
           Y+K+  + R I  ++     PK  K   K    KKKK     D KKT  K   K+KT ++
Sbjct: 361 YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKAPTKRKTANR 420

Query: 410 PKAKA 414
           PKA A
Sbjct: 421 PKADA 425