Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  280 bits (715), Expect = 8e-80
 Identities = 174/430 (40%), Positives = 238/430 (55%), Gaps = 19/430 (4%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           TFA L L   LL  +E + + +PT VQ EAIP  L GRD++A+A TGTGKTA F +P LQ
Sbjct: 2   TFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61

Query: 64  YL-LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADIL 122
            L ++  +  +   R L+L PTRELA QV E  +   +N  L  + + GGV        L
Sbjct: 62  RLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMAL 121

Query: 123 ATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQ 182
               D++VATPGRLL+           ++ L+LDEADRMLD+GF   +D+L +    ++Q
Sbjct: 122 RKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKRQ 181

Query: 183 TLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL 242
           TLLFSAT     +     +LL+DP  V+  P     K + QW    D    K EL   +L
Sbjct: 182 TLLFSATFS-EAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKK-RKSELFLHLL 239

Query: 243 TEQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301
            E+   + +VF+KTR+ +  L  EL+ A I    I G+ PQ  R  A+ RF+ G+V +L+
Sbjct: 240 AEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLV 299

Query: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361
           ATDVAARG+D+ D+  V+NFDLP  A+ Y+HRIGRTGRAG  G A+SLV A +   +A +
Sbjct: 300 ATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAI 359

Query: 362 ERYIKEEVKERFIDGLRPKHKKP-------VFKKKKKDIKKTADKGAVKK-------KTT 407
           E  I + +      G  P H+ P       + KK KK  KK  D G   K         +
Sbjct: 360 ETLINQVLPRHDELGFVPDHRVPTTTLGGQIIKKPKKP-KKPKDAGGKGKIHLGNWFDES 418

Query: 408 SKPKAKATKK 417
            KP AK  +K
Sbjct: 419 EKPNAKPIRK 428