Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  298 bits (763), Expect = 2e-85
 Identities = 176/417 (42%), Positives = 246/417 (58%), Gaps = 12/417 (2%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F    L   LL+A+ E+ F  PT VQ  AIP AL+GRD+  +A TG+GKTAAFV+P L  
Sbjct: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L+     +    R LIL PTRELA Q  ++ +  ++ T +    ITGG  ++  A +L  
Sbjct: 62  LIGDAVVRTD-VRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVLRK 120

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI++ TPGR++E+++A     + +E LILDEADRMLDMGF   V RL  EC  R+QTL
Sbjct: 121 VPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECAKRQQTL 180

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTE 244
           LFSAT  G  +   TA +L+DP H+         +   Q    A+D  HK +L+  +L  
Sbjct: 181 LFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWLLAN 240

Query: 245 QA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           +  +++++F  TR +   L   L    +    + G+  Q  R  AI R +EG V +L+AT
Sbjct: 241 ETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLVAT 300

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARG+D+  +  VINFD+PRS D Y+HRIGRTGRAG +G+AISL+  +D  +M+ +ER
Sbjct: 301 DVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIER 360

Query: 364 YIKEEVKERFIDGLR-----PKHKKPVFK----KKKKDIKKTADKGAVKKKTTSKPK 411
           Y+K+  + R + GL+     PK+ K   K    KKKKD KK  DK    K T  +PK
Sbjct: 361 YLKQRFEHRVVKGLKGSYMGPKNLKASGKAAGPKKKKDDKKKDDKKKA-KPTAKRPK 416