Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., ATP-dependent RNA helicase RhlE from Xanthomonas campestris pv. campestris strain 8004

 Score =  274 bits (701), Expect = 4e-78
 Identities = 159/380 (41%), Positives = 223/380 (58%), Gaps = 4/380 (1%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           +F  L L P LL A+ E G+  PT +Q +AIP  L G D+LA A TGTGKTAAF +P LQ
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 64  YLLDFPRRKAGPA--RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           +L   P+   GP   R LILTPTRELA QV +  +  +K  R+    I GGV      D 
Sbjct: 62  HLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDA 121

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTEC-RWR 180
           L    D+++A PGRL+++I+    D   IE LILDEADRMLDMGF P++ R+ T+  R  
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK 240
           +QTLLFSAT E   ++    + +++P  +   P     + I+   H  D    +  LL  
Sbjct: 182 RQTLLFSATFE-ENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           +  +  E+++VF +T+     L   LEK+ I  A I G   Q +R  A+S F+ G V +L
Sbjct: 241 LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL 300

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATD+AARGID+  +  VIN+DLP  A+ Y+HRIGRTGR G  G AISLV   +  ++ +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360

Query: 361 VERYIKEEVKERFIDGLRPK 380
           + R +  +V+ R + G  P+
Sbjct: 361 IVRMLGRDVEIRDVPGYEPQ 380