Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  300 bits (767), Expect = 8e-86
 Identities = 178/423 (42%), Positives = 246/423 (58%), Gaps = 16/423 (3%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F++  L   LL+A+ E+ F  PT VQA AIP AL GRD+  +A TG+GKTAAFV+P L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L+  P +     R +IL PTRELA Q  ++ +  ++ T +    ITGG  ++  A +L  
Sbjct: 62  LIG-PAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI++ TPGRLLE ++A   D + +E L+LDEADRMLDMGF   V+RL+ EC  R+QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL-T 243
           LFSAT  G G+      +LKDP H+                  AD   HK ++L  +L  
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 244 EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           E  +++I+F  T+     L   L   +     + G+  Q  R  AI R ++G   I++AT
Sbjct: 241 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARG+DV  +  VINFD+PRS D Y+HR+GRTGRAG  G+AISL+   D  +M+ VER
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 364 YIKEEVKERFIDGLR-----PKHKKPVFK----KKKK-----DIKKTADKGAVKKKTTSK 409
           Y+K+  + R I  ++     PK  K   K    KKKK     D KK A KG  K+KT ++
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNR 420

Query: 410 PKA 412
           PK+
Sbjct: 421 PKS 423