Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., ATP-dependent RNA helicase SrmB (RefSeq) from Shewanella amazonensis SB2B

 Score =  446 bits (1146), Expect = e-129
 Identities = 229/420 (54%), Positives = 296/420 (70%), Gaps = 5/420 (1%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F D +LDP LLE+++ MG + PT +Q   IP A++ RD+LA APTGTGKTA+F++PALQ+
Sbjct: 3   FEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQH 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L+DFPRR+ G  R+L+LTPTRELA Q+   A  LA N  L+I  ITGGV Y    ++L +
Sbjct: 63  LIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEMLKS 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI+VATPGRLLEY+D   F    +E L++DEADRMLDMGFG  V  ++ E   RKQ +
Sbjct: 123 NVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQAM 182

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL-T 243
           LFSATLEG GV  F  +LL +P  V++EPPR E+ KI QW H ADD  HK  LL  +L  
Sbjct: 183 LFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLLKQ 242

Query: 244 EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           E+ +R+IVF KTR+ +A L  +L++A I CA+++G+M Q +R  A+ RF +G+VN+LLAT
Sbjct: 243 EEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLAT 302

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARGID+ DI+HVINFD+PRSAD Y+HRIGRTGRAG KG AISLVEAHD  ++ +VER
Sbjct: 303 DVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVER 362

Query: 364 YIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA 423
           YI++ +K R I+ LRPKHK+     K    KK   K A  K   +KPKA   +  A   A
Sbjct: 363 YIEQPLKRRVIEELRPKHKEAKVPTK----KKVKAKDAKAKAKNAKPKAAPGRGPATPNA 418