Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., DEAD/DEAH box helicase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  283 bits (724), Expect = 8e-81
 Identities = 159/412 (38%), Positives = 239/412 (58%), Gaps = 3/412 (0%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F+D  LD  L+++++ MG   PT +Q++AIP AL G+D++AS+ TG+GKT AF++PA+Q 
Sbjct: 3   FSDFSLDKRLMQSLKHMGIETPTPIQSQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQR 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           ++          R+LIL PTRELA QV  Q + L  NT+    ++ GG  + + A  LA 
Sbjct: 63  VISSKALSKKDPRVLILLPTRELAQQVYAQLRLLVANTQYRAISVLGGENFNDQAKALAR 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTEC-RWRKQT 183
               +VATPGR+ +++         +E L+LDEADRMLD+GF P +  ++      R+QT
Sbjct: 123 EPHFIVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHRRRQT 182

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           L+FSATLE   V    A+LLK+P HV  +        I Q    AD + HK  LL+++L+
Sbjct: 183 LMFSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEHKEALLERLLS 242

Query: 244 EQAERSI-VFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
               R + +F  TR+    L   L +     A + GE+ Q +RN  +  F      IL+ 
Sbjct: 243 GNNFRQVMIFTATRQDTERLATLLAEKGYNTAALSGELRQAQRNQIMDSFSREHHRILVT 302

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           TDVA+RG+D+ ++S V+NFD+P+ A+ Y+HRIGRTGRAG KG AISLV   D     +V+
Sbjct: 303 TDVASRGLDISNVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLVGPKDWDNFLKVQ 362

Query: 363 RYIKEEVKERFIDGLRPKHKKPVFKKKKKDI-KKTADKGAVKKKTTSKPKAK 413
             +++  +   ++GL  K K    K+++KD   K    G  K++T   PK +
Sbjct: 363 ILLQKTFEFSVLEGLEAKFKGLAPKRERKDAGAKAKAAGKTKRQTADAPKGE 414