Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  282 bits (722), Expect = 1e-80
 Identities = 169/414 (40%), Positives = 239/414 (57%), Gaps = 8/414 (1%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F      P +L+A+ E G+   T +Q  AIP    G+DVLASA TGTGKTAAF +P LQ 
Sbjct: 3   FESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 65  LLDFPR-RKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123
           LLD P+ R+A  AR LIL PTREL  Q+A   +A AK+  L + T+ GG +    A  L 
Sbjct: 63  LLDTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQKLR 122

Query: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
              DI+VATPGRLLE++ A      A+E+L+LDEADRMLDMGF   + +L   C   +QT
Sbjct: 123 KGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKERQT 182

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           L+FSAT  G GV     +++K    + A+        +SQ  +  +    K ELL +++ 
Sbjct: 183 LMFSATFSG-GVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQR-RKRELLSELIG 240

Query: 244 EQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
            +  +R +VF  TRE    L  EL    IP A I  E  Q  R  A+  F EG + +L++
Sbjct: 241 RKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVLVS 300

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           T+VAARG+D+PD+ +V+NFDLP   + Y+HR+GRTGRAGK G+AIS V   ++  +A +E
Sbjct: 301 TEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLADIE 360

Query: 363 RYIKEEVKERFIDGLRPKHKKPVFK---KKKKDIKKT-ADKGAVKKKTTSKPKA 412
           + I + +K   + G    ++  + K   K++   KKT  +  A+ +    K  A
Sbjct: 361 KLIGQRLKRIVMPGYEVSNRDLLLKQLQKRRSFAKKTRVESDAIAQVAAEKSMA 414