Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., ATP-dependent RNA helicase SrmB from Rahnella sp. WP5

 Score =  487 bits (1253), Expect = e-142
 Identities = 248/422 (58%), Positives = 310/422 (73%), Gaps = 7/422 (1%)

Query: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
           + TF++LELD  L+EA+ + G+SRPT +QAEAIP A+DGRDVL SAPTGTGKTAAF++PA
Sbjct: 3   VTTFSELELDERLIEALGDKGYSRPTVIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPA 62

Query: 62  LQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           LQ+LLDFPR+K+GP RILILTPTRELAMQVAEQA+ LAK+T L+I TITGGV Y  HA++
Sbjct: 63  LQHLLDFPRKKSGPPRILILTPTRELAMQVAEQARELAKHTELDIATITGGVAYMNHAEV 122

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
            +  QDIVVAT GRLL+YI  E FDCRAIE LILDEADRMLDMGF   ++ +S E RWRK
Sbjct: 123 FSANQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARWRK 182

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           QTLLFSATLEG  +  F   +L +P  ++A+P RRERKKI QWY+RADD+ HK  +L  +
Sbjct: 183 QTLLFSATLEGEAIREFAERILTEPVEIEADPSRRERKKILQWYYRADDLAHKTRMLIHL 242

Query: 242 L-TEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           L  E   +S++F++ RER+ +L A L +A I   +++GEM Q +R  A+ R  E  VN+L
Sbjct: 243 LKQEDVTKSVIFVRKRERVHELVAWLREAGINSCYLEGEMVQVKRTEAVKRMVEDRVNVL 302

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATD+AARG+D+ DISHV NFDLP +AD+YLHRIGRTGRAG+KG AIS VEAHD  ++ +
Sbjct: 303 VATDIAARGLDINDISHVFNFDLPLTADIYLHRIGRTGRAGRKGTAISFVEAHDHLLLGK 362

Query: 361 VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA 420
           + RY+ E +K R +D  RPK K P  K   K  KK      V  K   K KA   K K  
Sbjct: 363 IGRYLNEPLKARVLDEFRPKTKAPSEKVTGKPSKK------VLAKRKEKQKADQEKSKVK 416

Query: 421 TK 422
            K
Sbjct: 417 VK 418