Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., ATP-dependent RNA helicase SrmB (RefSeq) from Shewanella loihica PV-4

 Score =  435 bits (1119), Expect = e-126
 Identities = 228/404 (56%), Positives = 287/404 (71%), Gaps = 3/404 (0%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F D  LD  LLE+++ MG   PT +Q + IP AL+ +D+LA APTGTGKTA+F++PALQ+
Sbjct: 16  FEDFHLDDTLLESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPALQH 75

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           LLDFPRR +G AR+LIL PTRELA QV   A  LA    L+I  ITGGV Y      L  
Sbjct: 76  LLDFPRRYSGQARVLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQALKE 135

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI+VATPGRL+EY+D E FD +++E L+LDEADRMLDMGF   V  ++ E + RK  +
Sbjct: 136 NIDILVATPGRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKHNM 195

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL-T 243
           LFSATLEG GV  F   LL +P  ++ +PPR E+ KI QW H ADD  HK  LL  IL  
Sbjct: 196 LFSATLEGGGVSRFAEMLLTNPVTIETKPPRSEKAKIHQWMHLADDKEHKFALLCDILKR 255

Query: 244 EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           E+  R+IVF+KTRE +A L  +L++A I CA+++G+M Q  R  A+ RF +G+VN+LLAT
Sbjct: 256 EEVSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNVLLAT 315

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARGID+  I+HVINFD+PRSAD Y+HRIGRTGRAG KG AISLVEAHD  ++A++ER
Sbjct: 316 DVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAKIER 375

Query: 364 YIKEEVKERFIDGLRPKHK--KPVFKKKKKDIKKTADKGAVKKK 405
           YI++ +K R ID LRPKHK  K   KKK K   K + K A KK+
Sbjct: 376 YIEQPLKRRVIDSLRPKHKEAKVPTKKKVKSSDKKSPKKAKKKR 419