Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  266 bits (681), Expect = 8e-76
 Identities = 151/398 (37%), Positives = 233/398 (58%), Gaps = 7/398 (1%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F +L L P +L+A+ EMG++  T +Q +AIP  L G+D+ A A TGTGKTAAF +P +Q 
Sbjct: 3   FDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQR 62

Query: 65  LLDFPRRKAGPA----RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD 120
           LL        PA    R L+L PTRELA+QV E  ++  K T      + GGV  +    
Sbjct: 63  LLHLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDIKPQIA 122

Query: 121 ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR 180
            +    + VVATPGRLL++++ +      ++ L+LDEADRMLDMGF P + R+       
Sbjct: 123 EMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILNMLPKT 182

Query: 181 KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK 240
           +Q+LLFSAT     ++     +L+ P  V+     +    I+   H   +   K  L+K 
Sbjct: 183 RQSLLFSATFSNE-IQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKKDLLIKL 241

Query: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           + + +  +++VF++T++    L  ELE+A I    I G+  Q+ R  A+  F+ G   +L
Sbjct: 242 LRSGEITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKNGGCKVL 301

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATDVAARG+D+  + +VINF+LP + + Y+HRIGRTGRAG++G AISLV AH+   +A 
Sbjct: 302 VATDVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVGYLAD 361

Query: 361 VERYIKEEVKERFIDGLRPK--HKKPVFKKKKKDIKKT 396
           +E+ IK ++++  + G  P+  ++ P    KK+   +T
Sbjct: 362 IEKLIKMQIEQVAVAGFEPEMDYEYPPGSGKKRRAHET 399