Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., DEAD/DEAH box helicase domain protein from Marinobacter adhaerens HP15

 Score =  273 bits (698), Expect = 7e-78
 Identities = 157/397 (39%), Positives = 239/397 (60%), Gaps = 16/397 (4%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F+DL LD  LL+AI  +GF   T +QAE +P  L   D++  A TGTGKTAAF+I A+Q 
Sbjct: 13  FSDLNLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQS 72

Query: 65  LLDFP----RRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD 120
           LL+ P     R A   R+L L PTRELAMQ+A+ A+ L ++T  N+ T+ GG+ Y +  D
Sbjct: 73  LLETPIPEKERFASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMNYDKQRD 132

Query: 121 ILATT-QDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTEC-- 177
            L     DI+VATPGRL++++ ++      ++ LILDEADRMLDMGF P V R+  +C  
Sbjct: 133 QLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTP 192

Query: 178 RWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADD---MPHK 234
           +  +QTLLFSAT   + V    +    +   V+ EP ++  +++ Q  +   D   +P  
Sbjct: 193 KEERQTLLFSATFN-QDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVYLVGDDEKLPVL 251

Query: 235 VELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFRE 294
           V  LK+    + E+++VF   R++  DL  +L    +  A + GE+ Q++R   + +F++
Sbjct: 252 VNFLKR---PEVEKALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQFKK 308

Query: 295 GDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHD 354
           G + +L+ATDVA RGI V  ++HV N++LP +A+ Y+HRIGRTGRAGK G++IS     D
Sbjct: 309 GSIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDD 368

Query: 355 QPMMARVERYIKEEVKERFIDG--LRPKHKKPVFKKK 389
              +  +E YI +++K    D   + P    P+ +K+
Sbjct: 369 SFALPAIETYISQKLKTAVPDEALMAPMDNPPITRKR 405