Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  296 bits (758), Expect = 9e-85
 Identities = 169/418 (40%), Positives = 243/418 (58%), Gaps = 7/418 (1%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F D  LD  LL++++ MG + PT +Q +A+P AL G+D++AS+ TG+GKT AF++PALQ 
Sbjct: 3   FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           ++          R+LIL PTRELA QV  Q + L  NT+    ++ GG  + + A  LA 
Sbjct: 63  VISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTEC-RWRKQT 183
               +VATPGR+ ++++ +      +E LILDEADRMLD+GF P +  ++      R+QT
Sbjct: 123 EPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQT 182

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           L+FSATL+   +    A LLK+P HV       E + ISQ  +  D + HK  LL ++L+
Sbjct: 183 LMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRLLS 242

Query: 244 EQAERS-IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
           +++ +  I+F  TR     L A+L       A + GE+ Q  RN  + +F  G   IL+ 
Sbjct: 243 DESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVT 302

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           TDVA+RG+D+ ++S VINFD+P+ A+ Y+HRIGRTGRAG KG AISLV   D     +V+
Sbjct: 303 TDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQ 362

Query: 363 RYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA 420
            ++++  +   I GL  K     F   K   K  A KG VK  T  K K K    KAA
Sbjct: 363 LFLRKTFEISVIKGLEAK-----FTGLKDKPKSVATKGVVKANTKGKSKPKPNVVKAA 415