Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  272 bits (696), Expect = 1e-77
 Identities = 159/429 (37%), Positives = 243/429 (56%), Gaps = 12/429 (2%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F      P +L AI + G+ + T +Q +AIP    G+DVLASA TGTGKTAAF +P LQ 
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 65  LLDFPRRKA-GPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123
           +++ P        R+LILTPTRELA QVAE  +A +K    ++ TI GGV+ +  A  L 
Sbjct: 63  MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122

Query: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
              DI+VATPGRLLE++ A      ++++L+LDEADRMLDMGF   + ++      ++Q 
Sbjct: 123 RGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQN 182

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           LLFSAT     V+    +++  P  + A+        +SQ  +  +    K ELL +++ 
Sbjct: 183 LLFSATFSS-AVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQR-RKRELLSELIG 240

Query: 244 EQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
           ++  ++ +VF  TR+    L  EL    IP   + GE  Q  R  A+  F  G V +L+A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           T+VAARG+D+P + +V+NFDLP  A+ Y+HRIGRTGRAGK G+AIS V   ++  +A +E
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE 360

Query: 363 RYIKEEVKERFIDGLRPKHKKPVFKK--------KKKDIKKTADKGAVKKKTTSKPKAKA 414
           + I ++++   + G     +  + K+        KK+  +    +  + +K+    + K 
Sbjct: 361 KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRQDNVSEQMIAEKSMQGRRVKM 420

Query: 415 TKKKAATKA 423
              +A +KA
Sbjct: 421 KVGQAPSKA 429