Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., ATP-dependent RNA helicase SrmB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  446 bits (1146), Expect = e-130
 Identities = 229/418 (54%), Positives = 299/418 (71%), Gaps = 6/418 (1%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F D +LDP LLE+++ MG   PT +Q E +P AL+ RD+LA APTGTGKTA+F++PALQ+
Sbjct: 3   FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L+DFPRR +G AR+LILTPTRELA Q+   A  LA +  LNI  ITGGV Y    + L  
Sbjct: 63  LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI+VATPGRL+EY+D  +F   +++ LI+DEADRMLDMGF   V  ++ E + RKQ +
Sbjct: 123 NIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL-T 243
           LFSATLEG GV  F  ++L DP  +D + PR+E+ KI QW H ADD  HK  LL  +L  
Sbjct: 183 LFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQ 242

Query: 244 EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           E  +R+IVF+KTR+ ++ L  +L +A IPCA+++G+M Q +R  A+SRF +G+VN+LLAT
Sbjct: 243 EDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLAT 302

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARGID+ DISHVINFD+PRSAD Y+HRIGRTGRAG KG AISL EAHD  ++ ++ER
Sbjct: 303 DVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKIER 362

Query: 364 YIKEEVKERFIDGLRPKHKK---PVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKK 418
           YI++ +K R I+ LRPKHK+   P  KK K   K+ A K    KK  +K  +K  +KK
Sbjct: 363 YIEQPLKRRIIEELRPKHKEARVPTKKKAKVKAKEAAKK--TSKKEAAKKASKIARKK 418