Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., ATP-dependent RNA helicase SrmB from Klebsiella michiganensis M5al

 Score =  503 bits (1296), Expect = e-147
 Identities = 254/422 (60%), Positives = 321/422 (76%), Gaps = 2/422 (0%)

Query: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
           + TF++LELD  LL+A+++ GF+RPT +QA AIP ALDGRD+L SAPTGTGKTAA+++PA
Sbjct: 3   VTTFSELELDENLLDALQDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPA 62

Query: 62  LQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           LQ+LLDFPR+K+GP RILILTPTRELAMQVA+ A+ LAK+T L+I TITGGV Y  HA++
Sbjct: 63  LQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEV 122

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
            +  QDIVVAT GRLL+YI  E FDCRA+E LILDEADRMLDMGF   ++ ++ E RWRK
Sbjct: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           QT+LFSATLEG  ++ F   LL++PA V A P  RERKKI QWY+RADD+ HK  LL  +
Sbjct: 183 QTMLFSATLEGDAIKDFAERLLEEPAEVSATPSTRERKKIHQWYYRADDIKHKTALLVHL 242

Query: 242 LTE-QAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           L + +A RSIVF++ RER+ +L   L +A I   W++GEM Q +RN AISR  +G +N+L
Sbjct: 243 LKQPEATRSIVFVRKRERVHELAGWLREAGINTCWLEGEMVQAKRNEAISRLTDGRINVL 302

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATD+AARGID+ D+SHV NFDLPR+AD+YLHRIGRTGRAGKKG AISLVEAHD  ++ +
Sbjct: 303 IATDIAARGIDIADVSHVFNFDLPRTADIYLHRIGRTGRAGKKGTAISLVEAHDHLLLGK 362

Query: 361 VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA 420
           + RYI+E +K R ID LRP  + P  K+  K  KK   K A +KK   K K +  K+   
Sbjct: 363 IGRYIEEPLKARVIDELRPTTRAPSEKQTGKPSKKVLAKRA-EKKEKEKEKPRVKKRHRD 421

Query: 421 TK 422
           TK
Sbjct: 422 TK 423