Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  270 bits (689), Expect = 9e-77
 Identities = 160/431 (37%), Positives = 246/431 (57%), Gaps = 18/431 (4%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F+DL LDP +L+AI E G+  PT +QAEAIP AL+GRDVL  A TGTGKTA+F +P +  
Sbjct: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMIT- 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           +L   R +A   R L+L PTRELA QVAE     AK+T+L    + GGV ++E   ++  
Sbjct: 63  MLRKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDK 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             D+++ATPGRLL++ +  +     ++ +++DEADRMLDMGF P ++++     + +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTL 182

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY--------HRADDMPHKVE 236
            FSAT+    +E  T   L +PA V+        + I+Q           RA     K E
Sbjct: 183 FFSATMAPE-IERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKRE 241

Query: 237 LLKKILTEQAE---RSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293
           +L+ ++  + +    +I+F   +  +  +   L K     A I G++ Q +R   + +FR
Sbjct: 242 MLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFR 301

Query: 294 EGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAH 353
           +G +  L+A+DVAARG+D+P++SHV NFD+P  A+ Y+HRIGRTGRAG+KG  + L    
Sbjct: 302 DGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVPA 361

Query: 354 DQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPK-A 412
           D  ++A +E  +K E+      G+      P   + K + +   +K   + +  +KP+ A
Sbjct: 362 DDKLLAAIEDLVKLEIPRIEAPGI----SAPQGGRSKDEERPEPEKRERRSRRRTKPEPA 417

Query: 413 KATKKKAATKA 423
           KA     A  A
Sbjct: 418 KANAPAQAPVA 428