Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 621 a.a., DEAD/DEAH box helicase from Ralstonia sp. UNC404CL21Col

 Score =  298 bits (764), Expect = 2e-85
 Identities = 160/397 (40%), Positives = 244/397 (61%), Gaps = 22/397 (5%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           FA L LD  ++ A+ E+ ++ PT VQA+AIP  L GRD+L ++ TG+GKTAAF++PA+Q 
Sbjct: 35  FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94

Query: 65  LLDFP-----------------RRKAGPAR--ILILTPTRELAMQVAEQAQALAKNTRLN 105
           + + P                 R +  PA+  +L+LTPTRELA+QV        ++ R  
Sbjct: 95  ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 154

Query: 106 IF-TITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDM 164
           +  +I GG+ Y +  D+LA   DI++ATPGRLL++ID+ R D  A++ L+ DEADRMLDM
Sbjct: 155 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 214

Query: 165 GFGPTVDRLSTECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQW 224
           GF   ++ +       +Q L+FSAT++ R +E     ++++P  ++    + ++  I + 
Sbjct: 215 GFSDDIEAIVGATPATRQMLMFSATMDRR-IEQLAERMMREPQRIEIAAAKIDQSNIEER 273

Query: 225 YHRADDMPHKVELLKKILTEQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQD 283
            H  DDM HK +LL  +L + + +++IVF  T+     L   L +       + G+M Q 
Sbjct: 274 LHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQG 333

Query: 284 RRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKK 343
            RN  ++  R G + +L+ATDVAARGIDVPDI+HV+NFDLP+ A+ Y+HRIGRTGRAG+ 
Sbjct: 334 ARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRS 393

Query: 344 GIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPK 380
           GIAI+LV  +D     R+ER++   +    ++GL PK
Sbjct: 394 GIAINLVNHNDTFQWRRIERFVDRRIDASVVEGLEPK 430