Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., RNA helicase from Burkholderia phytofirmans PsJN

 Score =  296 bits (759), Expect = 8e-85
 Identities = 163/403 (40%), Positives = 237/403 (58%), Gaps = 23/403 (5%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           +FA L L   ++ A+   G+  PT VQ  AIP  + GRD++ S+PTG+GKTAAF++PA++
Sbjct: 49  SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 108

Query: 64  YLLDFPRRKAGPAR--------------------ILILTPTRELAMQVAEQAQALAKNT- 102
                 + +A   R                    +L+LTPTRELAMQV   A    K+  
Sbjct: 109 RFSQLQKAQASQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 168

Query: 103 RLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRML 162
           RL   +I GGV Y +   +LA   +I+VATPGRL+++++  R D   ++ L+LDEADRML
Sbjct: 169 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 228

Query: 163 DMGFGPTVDRLSTECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKIS 222
           DMGF   ++ +       +QT+LFSATL+G+ +   T  LLKDP  ++      +R  I+
Sbjct: 229 DMGFIEDIETIVAATPATRQTMLFSATLDGK-ITSLTGRLLKDPERIEIVQRLEQRTNIA 287

Query: 223 QWYHRADDMPHKVELLKKILTEQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMP 281
           Q  H  DD  HK  LL  +L ++  +++IVF  T+     L   L  A    A + G++P
Sbjct: 288 QTVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLP 347

Query: 282 QDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAG 341
           Q  RN  I   RE  V +L+ATDVAARGID+P I+HV N+DLP+ A+ Y+HRIGRTGRAG
Sbjct: 348 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 407

Query: 342 KKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKP 384
           + GIA+SLV   +Q  + R+ER+++  +    ++G  P+   P
Sbjct: 408 RSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAP 450