Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., ATP-dependent RNA helicase SrmB (RefSeq) from Shewanella sp. ANA-3

 Score =  446 bits (1147), Expect = e-130
 Identities = 229/416 (55%), Positives = 297/416 (71%), Gaps = 2/416 (0%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F D +LDP LLE+++ MG   PT +Q E +P AL+ RD+LA APTGTGKTA+F++PALQ+
Sbjct: 3   FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L+DFPRR +G ARILILTPTRELA Q+   A  LA    LNI  ITGGV Y    + L  
Sbjct: 63  LIDFPRRYSGHARILILTPTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEALKD 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI+VATPGRL+EY+D  +F   +++ LI+DEADRMLDMGF   V  ++ E + RKQ +
Sbjct: 123 NIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL-T 243
           LFSATLEG GV  F  ++L DP  +D + PR+E+ KI QW H ADD  HK+ LL  +L  
Sbjct: 183 LFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKEHKIALLCYLLKQ 242

Query: 244 EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           E  +R+IVF+KTR+ ++ L  +L KA IPCA+++G+M Q +R  A+SRF +G+VN+LLAT
Sbjct: 243 EDVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLAT 302

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARGID+ DISHVINFD+PRSAD Y+HRIGRTGRAG KG AISL EAHD  ++ ++ER
Sbjct: 303 DVAARGIDIDDISHVINFDMPRSADSYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKIER 362

Query: 364 YIKEEVKERFIDGLRPKHKKP-VFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKK 418
           YI++ +K R I+ LRPKHK+  V  KKK  +K         KK  +K  +K  +KK
Sbjct: 363 YIEQPLKRRIIEELRPKHKEARVPTKKKAKVKAKEAAKRTSKKEAAKKASKIARKK 418