Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  275 bits (704), Expect = 1e-78
 Identities = 162/430 (37%), Positives = 247/430 (57%), Gaps = 14/430 (3%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F      P +L AI + G+ + T +Q +AIP    G+DVLASA TGTGKTAAF +P LQ 
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 65  LLDFPRRKA-GPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123
           +++ P       AR+LILTPTRELA QVA+  +A +K    ++ TI GGV+ +  A  L 
Sbjct: 63  MVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122

Query: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
              DI+VATPGRLLE++ A      +I++L+LDEADRMLDMGF   + ++      ++Q 
Sbjct: 123 RGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQN 182

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           LLFSAT     V+    D++  P  + A+        +SQ  +  +    K ELL +++ 
Sbjct: 183 LLFSATFSS-AVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQR-RKRELLSELIG 240

Query: 244 EQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
           ++  ++ +VF  TR+    L  EL    IP   + GE  Q  R  A+  F  G V +L+A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           T+VAARG+D+P + +V+NFDLP  A+ Y+HRIGRTGRAGK G+AIS V   ++  +A +E
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE 360

Query: 363 RYIKEEVKERFIDG---------LRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAK 413
           + I ++++   + G         L+    +  F KK++ +   +++  + +K+    + K
Sbjct: 361 KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRLDNVSEQ-IIAEKSMQGRRVK 419

Query: 414 ATKKKAATKA 423
               +A +KA
Sbjct: 420 MKVGQAPSKA 429