Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  288 bits (738), Expect = 2e-82
 Identities = 164/421 (38%), Positives = 246/421 (58%), Gaps = 8/421 (1%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F D  LD  LL++++ MG + PT +Q +A+P AL G+D++AS+ TG+GKT AF++PA+Q 
Sbjct: 3   FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAMQR 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           ++          R+LIL PTRELA QV  Q + L  NT+    ++ GG  + + A  LA 
Sbjct: 63  VISTRALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTEC-RWRKQT 183
               +VATPGR+ ++++ +      +E L+LDEADRMLD+GF P +  ++      R+QT
Sbjct: 123 EPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRRQT 182

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           L+FSATL+   +    A LLK+P+HV       E + I+Q  +  D + HK  LL ++L+
Sbjct: 183 LMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTRLLS 242

Query: 244 EQAERS-IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
           ++  +  I+F  TR     L ++L       A + GE+ Q  RN  + +F  G   IL+ 
Sbjct: 243 DETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVT 302

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           TDVA+RG+D+ ++S VINFD+P+ A+ Y+HRIGRTGRAG KG AISLV   D     +V+
Sbjct: 303 TDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQ 362

Query: 363 RYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKA-TKKKAAT 421
            ++++  +   I GL  K     F   K   K  A K   K  T +K K K+ T K AA+
Sbjct: 363 LFLRKTFEISVIQGLEAK-----FSGLKDKPKTAATKAVTKAGTKTKAKTKSKTVKTAAS 417

Query: 422 K 422
           +
Sbjct: 418 R 418