Pairwise Alignments

Query, 529 a.a., peptide chain release factor 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., translation elongation factor G (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (377), Expect = 3e-40
 Identities = 130/487 (26%), Positives = 213/487 (43%), Gaps = 41/487 (8%)

Query: 3   TTPYFGEVSKRRTFAIISHPDAGKTTITEKVLLFGRAIQVAGTVKGRGSNQHAKSDWMEM 62
           TTP    + + R   I +H DAGKTT TE+VL +       G V        A +DWM  
Sbjct: 4   TTP----IERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGA----ATTDWMVQ 55

Query: 63  EKERGISVTTSV-------MQFPYGDCLVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDA 115
           E+ERGI++T++        M   + +  +N++DTPGH DF+ +  R+L  +D  ++V   
Sbjct: 56  EQERGITITSAAVTTFWRGMDAQFTEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCG 115

Query: 116 AKGVEDRTRKLMEVTRLRDTPIVTFMNKLDREIRDPMELMDEVENELKIACSPITWPIGC 175
           A GVE ++  +         P + F+NK+DR   D   ++ ++   L   C PI   IG 
Sbjct: 116 ASGVEPQSETVWRQADKYRVPRIVFVNKMDRAGADFERVVKQIRTRLGATCVPIQLNIGA 175

Query: 176 GKEFKGVYHIHRDETILYT-SGQGHTIQEERIIKGLD-NPELDQAVGADLAAQLREEL-- 231
            + F GV  + + + I +  + QG T   E I   L    E       + AA+  +EL  
Sbjct: 176 EENFTGVIDLIKMKAINWNEADQGMTFSYEAIPAHLTAKAEEMHEFLVEAAAEASDELMD 235

Query: 232 -ELVLGASHEFD-----RELFLQGELTPVFFGTALGNFGVDHMLDGLTQWAPSPMPRQAA 285
             L  G   E +     R+  +  E+     G+A  N GV  +LD + ++ P+P+     
Sbjct: 236 KYLEEGTLSEEEIKKALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPI 295

Query: 286 ERVVEASEE---------KFTGFVFKIQANMDPKHRDRIAFVRIVSGTYKQGMKMNHVRL 336
           + + +  +E          F    FKI    DP     + F+R+ SG  + G  + +   
Sbjct: 296 KGIDDNEQEVERPSDDNAPFAALAFKIAT--DP-FVGTLTFIRVYSGVLESGSGVYNSVK 352

Query: 337 GKQVNISDAVTFMAGDRARAEEAFAGDIIGLHNHGTIQIGDTFTQGETLKFTGIPNFAPE 396
            K+  I   V   A DR   +E  AGDI        +  GDT    +         F PE
Sbjct: 353 QKRERIGRIVQMHANDRTELKEVRAGDIAAAIGLKEVTTGDTLCDNDHKVILERMEF-PE 411

Query: 397 LFRRIRLRDPLKQKQLLKGLV---QLSEEGAVQVFRPLQNNDLIVGAVGVLQFDVVVSRL 453
               I +    K  Q   G+      +E+ + +V    +++  ++  +G L  D++V R+
Sbjct: 412 PVITIAVEPKSKADQDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRM 471

Query: 454 KSEYNVE 460
           + E+ VE
Sbjct: 472 RREFGVE 478