Pairwise Alignments

Query, 529 a.a., peptide chain release factor 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., elongation factor G (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  152 bits (385), Expect = 3e-41
 Identities = 138/491 (28%), Positives = 217/491 (44%), Gaps = 68/491 (13%)

Query: 14  RTFAIISHPDAGKTTITEKVLLFGRAIQVAGTVKGRGSNQHAKSDWMEMEKERGISVTTS 73
           R   I++H DAGKTT +E++L +       G V        A  DWME E+ERGI++T++
Sbjct: 10  RNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGA----ATMDWMEQEQERGITITSA 65

Query: 74  VMQFPY---GDCL-VNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDAAKGVEDRTRKLMEV 129
                +   GD   +NL+DTPGH DF+ +  R+L  +D  +    A  GVE ++  +   
Sbjct: 66  ATTTRWKYAGDTYKINLIDTPGHVDFTAEVERSLRILDGAVAAYCAVGGVEPQSETVWRQ 125

Query: 130 TRLRDTPIVTFMNKLDREIRDPMELMDEVENELKIACSPITWPIGCGKEFKGVYHIHRDE 189
               + P + ++NK+DR   D  E++ +++  L     PI  PIG  + FKG+  + + +
Sbjct: 126 ADKYNVPRIAYVNKMDRSGADFFEVVRQMKAVLGANPCPIVVPIGAEETFKGLVDLIKMK 185

Query: 190 TILY---TSGQGHTIQEERIIKGLDNPELDQAVGADLAAQLREELELVLGASHEFD---- 242
            I +   T G  +T++E               + ADL  +  E  + +L    EFD    
Sbjct: 186 AIYWHDETMGADYTVEE---------------IPADLVDEANEWRDKMLEKVAEFDDALM 230

Query: 243 -------------------RELFLQGELTPVFFGTALGNFGVDHMLDGLTQWAPSPM--- 280
                              R   +Q  + P+  G++  N GV  +LD +  + PSP+   
Sbjct: 231 EKYFDDPSTITEEEVLRALRNATVQMAVVPMLCGSSFKNKGVQTLLDYVCAFLPSPLDTE 290

Query: 281 ------PRQAAERVVEAS-EEKFTGFVFKIQANMDPKHRDRIAFVRIVSGTYKQGMKMNH 333
                 P   AE   + S +EK +   FKI    DP +  R+ F R+ SG  + G  + +
Sbjct: 291 NVIGTNPNTGAEEDRKPSDDEKTSALAFKIAT--DP-YVGRLTFFRVYSGKIEAGSYIYN 347

Query: 334 VRLGKQVNISDAVTFMAGDRARAEEAFAGDIIGLHNHGTIQIGDTFTQGETLKFTGIPNF 393
            R GK+  +S      +  +   E   AGDI        I  GDT    ET         
Sbjct: 348 SRSGKKERVSRLFQMHSNKQNPVEVIGAGDIGAGVGFKDIHTGDTLCD-ETAPIVLESMD 406

Query: 394 APELFRRIRLRDPLKQK---QLLKGLVQLSEEG-AVQVFRPLQNNDLIVGAVGVLQFDVV 449
            PE    I + +P  QK   +L  GL +L+EE     V    Q    ++  +G L  D++
Sbjct: 407 FPEPVIGIAV-EPKTQKDMDKLSNGLAKLAEEDPTFTVKTDEQTGQTVISGMGELHLDII 465

Query: 450 VSRLKSEYNVE 460
           + RLK E+ VE
Sbjct: 466 IDRLKREFKVE 476