Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1247 a.a., sensory box/GGDEF domain/EAL domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  343 bits (880), Expect = 3e-98
 Identities = 181/456 (39%), Positives = 282/456 (61%), Gaps = 8/456 (1%)

Query: 214  DDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHST 273
            D +++   + F  +   K  A+++L+  A++D LTGL NR+L   +L  A+   Q + S 
Sbjct: 780  DRQITHFVAVFADISSLKH-AQARLDYQAHHDPLTGLPNRTLFESRLLAALNGQQENGSQ 838

Query: 274  GVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLS 333
            G + +LDLDRFK INDSLGH +GD L+K +A+R+    ++    AR+GGDEF +L+P L 
Sbjct: 839  GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAVRLREQLRDIDTVARLGGDEFIILLPGLQ 898

Query: 334  -PAKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAK 392
             P+ AE +A++LL   + P+   +H+F+ + SIG S++P  G     +++ AD A+YR+K
Sbjct: 899  QPSDAEHIAQKLLNCFAAPFQAGEHEFFISASIGTSLYPQDGCDVATLVKNADAAMYRSK 958

Query: 393  ASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALIR 451
            A GRN+   Y  ++ AQ    + +E  L  A+ + +L L +QP++    N ++G EALIR
Sbjct: 959  AKGRNRVESYTRDLTAQASERVALEHELRRAIERNELSLSFQPKISLVDNQLVGAEALIR 1018

Query: 452  WNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQ-GILPPHFRRLAINI 510
            W HP  G +PP  F+P+AEE G IL IG+W++E+AC Q  +W      L P    L++N+
Sbjct: 1019 WTHPTFGDVPPEHFIPLAEENGMILQIGDWVLERACRQLCEWNDAYDSLGP----LSVNL 1074

Query: 511  SPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISI 570
            +  Q  Q + + ++   LR+  +    ++LEITE+ ++   E A+  + +LK+  + ++I
Sbjct: 1075 AGAQLRQPNLLGRIEQLLREHQLEPGLLQLEITENFIMSQAEEALTVLHQLKKLGVQLAI 1134

Query: 571  DDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGV 630
            DDFGTGYSSL YLK L +D+LKID+SFV  L  D +D AIV  I+A+ R +   +IAEGV
Sbjct: 1135 DDFGTGYSSLSYLKRLPLDILKIDQSFVRGLPDDPHDAAIVRAIIALGRSMQFTIIAEGV 1194

Query: 631  EDTSELAALKKLGCNQFQGYLFDKPLRAEEIAQRFV 666
            E  ++   L + GC Q QGY+   PL A+E A  F+
Sbjct: 1195 ETLAQQQFLTEEGCEQIQGYIVSLPLCADEFAATFL 1230



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 59   NASQAAYHLNNLLA--EQVATTLMLDPGIFKVEIVDDFGDVMTRKEKAISEQSQL 111
            N + A     NLL   EQ+     L+PG+ ++EI ++F  +M++ E+A++   QL
Sbjct: 1073 NLAGAQLRQPNLLGRIEQLLREHQLEPGLLQLEITENF--IMSQAEEALTVLHQL 1125