Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1003 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  353 bits (907), Expect = e-101
 Identities = 195/465 (41%), Positives = 288/465 (61%), Gaps = 12/465 (2%)

Query: 201 DTQRSPLPLRLTHDDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKL 260
           +T RSP       + +L ++A+    +   ++L E ++  +  +D+LTGL NR+LL  +L
Sbjct: 509 NTVRSPSAA----ETQLIDMATPLAGIAIERQLTEKRIRFMGDHDALTGLPNRTLLEDRL 564

Query: 261 SDAIETAQNSHSTGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARI 320
             A+  AQ  +    + +LDLD+FK +NDSLGH+ GD+L+K VA RM    +      R+
Sbjct: 565 KQAMLYAQRYNRLVTVVFLDLDKFKLVNDSLGHSAGDELLKTVAQRMLGCVRRTDTVVRL 624

Query: 321 GGDEFAVLIPYLSPAKAEEVAKQLLTL---ISNPYAVDDHQFYCTVSIGISVFPSVGSCN 377
           GGDEF +++ +  P+  + V   L  +   I  P  +  H  + T S+G++ +P+ G+  
Sbjct: 625 GGDEFVIIL-FDQPSDLDGVTPVLHKIQEAILRPIQLSGHTLHVTCSMGLATYPTDGTDT 683

Query: 378 IDVLRQADTALYRAKASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQV 437
             +L  AD A+YRAK  GRN F FY  EM  +V+  L ++ GL  ALN  +  L YQPQV
Sbjct: 684 DTLLSNADAAMYRAKELGRNSFQFYTSEMNNKVQGKLAMQDGLRSALNNDEFLLLYQPQV 743

Query: 438 DEQHN-IIGVEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQ 496
           D Q   IIGVEALIRW HP+ G++ P  F+P AEETG I+PIG+W+I  AC Q   W+  
Sbjct: 744 DLQSGQIIGVEALIRWQHPELGMVSPIKFIPQAEETGLIVPIGDWVIHSACRQNKAWQDA 803

Query: 497 GILPPHFRRLAINISPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIE 556
           G  P     +++NIS  QF +   I++V HAL+++G+    +ELE+TESL++++++ AI 
Sbjct: 804 GWPPI---TMSVNISARQFIERDLIDRVMHALQESGLDPMYLELELTESLIMQDLQQAIS 860

Query: 557 KMAKLKESQISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILA 616
           KM  L+   IS+SIDDFGTGYSSL  LK   +  LKID+SFV  L  ++ND+AI   +++
Sbjct: 861 KMKALQAMGISLSIDDFGTGYSSLAALKSFPIARLKIDQSFVRDLPDNENDKAIATAVIS 920

Query: 617 IARKLNLEVIAEGVEDTSELAALKKLGCNQFQGYLFDKPLRAEEI 661
           +  KLNL+VIAEGVE   +   L+  GC++ QGY F K + A+EI
Sbjct: 921 LGHKLNLKVIAEGVETEEQQTFLRDNGCDEIQGYFFSKAVSAQEI 965